MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:328.1 nTPM
HPA Brain:155.7 nTPM
GTEx:328.1 nTPM
FANTOM5:276.8 Scaled Tags Per Million
Pig:706.4 nTPM
Mouse:87.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 155.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.4
1870 Female, age 42, unknown 127.5
1833 Male, age 53, unknown 118.1
1830 Male, age 51, unknown 117.9
2411 Female, age 72, unknown 117.1
2666 Male, age 74, left hemisphere 115.3
2828 Female, age 72, unknown 115.3
1827 Male, age 72, unknown 111.8
2019 Male, age 18, unknown 108.3
2586 Male, age 75, left hemisphere 104.4
2219 Male, age 76, both hemispheres 98.8
Dorsal raphe nucleus
nTPM: 141.7
2047 Male, age 72, unknown 153.4
2298 Female, age 72, unknown 147.3
2016 Female, age 72, unknown 140.4
2750 Male, age 76, both hemispheres 136.1
1828 Male, age 53, unknown 131.3
Inferior colliculus
nTPM: 117.9
2097 Female, age 72, unknown 124.0
1890 Male, age 53, unknown 121.2
2849 Male, age 72, unknown 114.4
1848 Female, age 42, unknown 112.0
Median raphe nucleus
nTPM: 155.7
2220 Male, age 76, midline 155.7
Periaquaductal grey, anterior
nTPM: 123.8
2502 Female, age 75, unknown 133.0
1947 Male, age 18, unknown 123.2
1795 Male, age 51, unknown 115.3
Periaquaductal grey, dorsal
nTPM: 127.0
2850 Male, age 76, both hemispheres 146.5
1840 Male, age 53, unknown 125.5
2464 Female, age 72, unknown 119.5
1831 Male, age 72, unknown 116.4
Periaquaductal grey, lateral
nTPM: 125.6
2140 Male, age 76, both hemispheres 127.8
2053 Male, age 18, unknown 126.4
2272 Male, age 74, both hemispheres 122.5
Pretectal area
nTPM: 118.8
2224 Female, age 72, unknown 139.2
1817 Female, age 42, unknown 134.3
2667 Female, age 75, unknown 123.6
2273 Male, age 74, both hemispheres 122.9
2007 Male, age 72, unknown 121.6
1815 Male, age 53, unknown 120.4
2825 Male, age 18, unknown 117.2
2316 Male, age 76, right hemisphere 113.9
1816 Male, age 51, unknown 112.4
1944 Female, age 72, unknown 107.7
2407 Male, age 75, both hemispheres 94.2
Red nucleus
nTPM: 122.1
1821 Female, age 72, unknown 150.2
1865 Male, age 51, unknown 136.7
1904 Male, age 53, unknown 135.7
1954 Female, age 42, unknown 130.3
2503 Female, age 72, unknown 126.3
2769 Male, age 72, unknown 124.5
2823 Male, age 76, right hemisphere 121.2
2227 Male, age 72, unknown 119.2
2785 Male, age 18, unknown 111.2
2725 Female, age 75, unknown 111.0
2588 Male, age 74, left hemisphere 105.8
2584 Male, age 75, left hemisphere 93.4
Substantia nigra
nTPM: 141.1
2699 Male, age 18, unknown 178.5
1916 Female, age 42, unknown 170.0
1851 Male, age 51, unknown 166.7
2665 Male, age 74, both hemispheres 137.2
2409 Female, age 72, unknown 132.9
1889 Female, age 72, unknown 131.8
2241 Male, age 72, unknown 131.5
2590 Female, age 75, unknown 131.5
1941 Male, age 53, unknown 122.7
2583 Male, age 75, right hemisphere 107.9
Superior colliculus
nTPM: 113.7
2587 Male, age 74, left hemisphere 146.6
1913 Female, age 42, unknown 124.4
1796 Male, age 53, unknown 121.4
1995 Male, age 72, unknown 120.4
2668 Female, age 75, unknown 116.1
1839 Male, age 51, unknown 112.8
2261 Male, age 18, unknown 100.9
1895 Male, age 76, right hemisphere 99.6
2087 Female, age 72, unknown 98.7
2664 Male, age 75, both hemispheres 96.3
Ventral tegmental area
nTPM: 147.2
2223 Female, age 72, unknown 168.8
2410 Female, age 72, unknown 165.1
1915 Female, age 42, unknown 152.2
2218 Male, age 76, both hemispheres 142.3
2021 Male, age 53, unknown 137.0
1942 Male, age 51, unknown 117.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 328.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 328.1
Samples: 183

Max nTPM: 779.1
Min nTPM: 146.2
Std nTPM: 92.8
Median nTPM: 311.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 779.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 635.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 586.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 568.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 567.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 536.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 530.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 499.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 496.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 494.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 490.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 276.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 276.8
FF:10158-103A5 76 years, female 276.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 706.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 692.1
Samples: 4

Max nTPM: 1041.7
Min nTPM: 534.8
Sample A Female 1041.7
Sample B Female 638.0
Sample C Male 553.8
Sample D Male 534.8
Midbrain
nTPM: 706.4
Samples: 4

Max nTPM: 1077.6
Min nTPM: 480.3
Sample A Female 1077.6
Sample B Female 758.6
Sample C Male 509.2
Sample D Male 480.3
Periaqueductal gray
nTPM: 616.9
Samples: 3

Max nTPM: 676.1
Min nTPM: 511.3
Sample B Female 511.3
Sample C Male 676.1
Sample D Male 663.4
Superior colliculi
nTPM: 647.3
Samples: 4

Max nTPM: 883.9
Min nTPM: 458.1
Sample A Female 883.9
Sample B Female 619.0
Sample C Male 458.1
Sample D Male 628.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.9
Samples: 4

Max nTPM: 93.1
Min nTPM: 82.1
Sample A Male 93.1
Sample B Male 82.1
Sample C Female 84.6
Sample D Female 91.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631702 Antisense, RP_040907_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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