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RPS18
HPA
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  • RPS18
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2907.2 nTPM
HPA:1955.9 nTPM
GTEx:2907.2 nTPM
FANTOM5:210.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050159
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1955.9
overview
Male, age 65
Small intestine sample 232
nTPM: 2600.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1807.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1723.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1691.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2907.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2907.2
Samples: 207

Max nTPM: 7533.7
Min nTPM: 1148.1
Std nTPM: 977.9
Median nTPM: 2726.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 7533.7
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 6119.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 5688.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5670.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 5422.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5416.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 5394.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4945.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 4918.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4823.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4774.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4695.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4552.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4535.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4532.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 4484.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4423.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 4388.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4299.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4272.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4158.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4122.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 4028.9
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 4027.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4018.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3978.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3924.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3855.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3854.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3831.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3788.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 3745.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 3742.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3663.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3612.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3595.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 3588.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3571.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3529.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3515.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3511.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3485.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 3480.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3475.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3473.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3472.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3462.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 3457.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3447.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3446.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3443.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3432.5
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 3427.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3400.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 3380.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3377.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3377.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3376.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 3366.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3362.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3357.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 3346.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3346.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3346.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3335.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3314.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3294.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3288.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 3287.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3243.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3238.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3202.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3146.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 3142.7
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 3128.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3117.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3116.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3097.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3077.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3075.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 3075.4
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 3055.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3027.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 3023.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3014.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2953.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2928.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2903.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2890.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2868.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2856.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2853.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2844.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2839.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2837.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2837.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2830.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2805.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2781.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2772.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2748.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2735.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2730.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2726.6
GTEX-1192X-2526-SM-59868 50-59 years, male 2723.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2717.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 2689.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2689.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2686.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2681.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2679.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2638.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2637.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2635.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2633.3
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2616.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2612.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2579.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2561.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2552.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2548.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2539.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2525.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2499.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2488.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 2483.9
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 2478.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2469.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2451.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 2451.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 2444.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2439.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2406.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2402.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2397.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2373.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2372.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2361.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2330.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2318.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2316.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2316.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2287.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2282.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2263.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2263.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2252.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 2250.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2245.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2233.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2198.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2193.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2190.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2178.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2168.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2167.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2144.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2144.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2134.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2123.3
GTEX-178AV-1226-SM-GOR11 40-49 years, male 2119.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2102.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2102.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2100.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2088.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2079.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2074.1
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 2067.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2063.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2060.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2041.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2039.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2033.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 2013.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1997.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1992.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1989.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1974.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1960.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1951.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1927.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1917.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1912.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1910.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1902.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1898.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1896.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1895.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1888.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1864.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1824.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1805.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1784.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1780.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1767.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1726.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1715.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1666.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1643.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1594.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1593.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1587.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1552.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1448.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1371.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1298.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1148.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 210.9
FF:10024-101D6 15,40,85 years, mixed 210.9

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