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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4328.6 nTPM
GTEx:4328.6 nTPM
FANTOM5:430.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050159
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4328.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 4328.6
Samples: 170

Max nTPM: 12612.8
Min nTPM: 1919.6
Std nTPM: 1415.5
Median nTPM: 4243.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 12612.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 9228.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 7903.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 7872.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 7610.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 7424.0
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 7094.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 7006.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 6923.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 6904.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 6523.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 6509.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 6400.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 6161.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 6130.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 5974.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 5957.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 5777.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 5772.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 5767.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 5753.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 5624.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 5537.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 5511.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 5461.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 5425.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 5424.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 5411.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 5387.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 5338.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 5310.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 5276.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 5262.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 5250.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 5156.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 5150.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 5097.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 5084.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 5062.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 5047.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 5043.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 5027.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 4976.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 4918.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 4881.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 4852.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 4840.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 4833.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 4817.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 4769.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 4768.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 4742.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 4737.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 4731.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 4705.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 4704.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 4657.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 4643.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 4603.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 4603.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 4597.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 4595.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 4574.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 4571.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 4542.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 4535.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 4527.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 4513.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 4509.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 4502.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 4496.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 4490.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 4489.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 4473.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 4462.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 4433.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 4426.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 4424.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 4406.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 4383.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 4370.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 4342.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 4335.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 4333.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 4256.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 4231.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 4202.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 4154.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 4118.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 4105.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 4049.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 4014.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 4004.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 3996.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3994.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3984.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 3982.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 3982.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 3940.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 3919.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 3907.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 3902.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 3841.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 3823.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 3801.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 3758.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 3722.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 3710.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 3671.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 3668.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 3643.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 3638.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 3638.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 3624.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 3620.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 3604.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 3562.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 3542.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 3504.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 3475.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 3470.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 3419.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 3418.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 3413.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3407.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 3393.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 3373.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3339.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 3336.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 3326.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 3274.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 3246.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 3237.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 3220.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3187.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 3159.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 3149.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3132.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 3120.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 3058.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 3006.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2996.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2996.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2986.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2914.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2899.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2879.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 2876.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 2873.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2836.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 2833.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2829.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2788.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2769.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2711.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 2698.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2669.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2667.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2652.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2604.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2544.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2510.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 2453.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 2451.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2439.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2412.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2397.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2353.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2273.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1919.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

430.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 430.1
FF:10204-103F6 68 years, female 430.1

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