MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:455.7 nTPM
HPA Brain:137.8 nTPM
GTEx:455.7 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:172.6 nTPM
Mouse:115.4 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 137.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.9
1870 Female, age 42, unknown 143.4
1833 Male, age 53, unknown 120.4
1830 Male, age 51, unknown 113.7
1827 Male, age 72, unknown 111.6
2666 Male, age 74, left hemisphere 110.0
2411 Female, age 72, unknown 107.8
2219 Male, age 76, both hemispheres 105.3
2828 Female, age 72, unknown 102.7
2019 Male, age 18, unknown 101.4
2586 Male, age 75, left hemisphere 83.3
Dorsal raphe nucleus
nTPM: 122.7
2750 Male, age 76, both hemispheres 127.7
2016 Female, age 72, unknown 124.1
2047 Male, age 72, unknown 122.2
1828 Male, age 53, unknown 120.3
2298 Female, age 72, unknown 119.4
Inferior colliculus
nTPM: 131.7
2849 Male, age 72, unknown 144.0
2097 Female, age 72, unknown 132.5
1848 Female, age 42, unknown 128.5
1890 Male, age 53, unknown 121.6
Median raphe nucleus
nTPM: 137.8
2220 Male, age 76, midline 137.8
Periaquaductal grey, anterior
nTPM: 113.3
1947 Male, age 18, unknown 119.2
2502 Female, age 75, unknown 111.5
1795 Male, age 51, unknown 109.2
Periaquaductal grey, dorsal
nTPM: 126.0
2850 Male, age 76, both hemispheres 149.4
1840 Male, age 53, unknown 137.8
1831 Male, age 72, unknown 112.8
2464 Female, age 72, unknown 103.8
Periaquaductal grey, lateral
nTPM: 116.4
2140 Male, age 76, both hemispheres 127.1
2053 Male, age 18, unknown 125.6
2272 Male, age 74, both hemispheres 96.5
Pretectal area
nTPM: 123.2
2667 Female, age 75, unknown 142.1
2224 Female, age 72, unknown 138.6
1817 Female, age 42, unknown 130.0
2407 Male, age 75, both hemispheres 128.0
2825 Male, age 18, unknown 126.4
1944 Female, age 72, unknown 123.0
1815 Male, age 53, unknown 118.5
1816 Male, age 51, unknown 117.5
2007 Male, age 72, unknown 113.2
2273 Male, age 74, both hemispheres 109.4
2316 Male, age 76, right hemisphere 109.0
Red nucleus
nTPM: 124.2
2725 Female, age 75, unknown 148.5
1821 Female, age 72, unknown 141.1
1865 Male, age 51, unknown 135.2
2227 Male, age 72, unknown 129.9
1954 Female, age 42, unknown 129.0
2503 Female, age 72, unknown 128.6
1904 Male, age 53, unknown 123.8
2769 Male, age 72, unknown 122.0
2823 Male, age 76, right hemisphere 118.6
2584 Male, age 75, left hemisphere 109.5
2588 Male, age 74, left hemisphere 104.1
2785 Male, age 18, unknown 100.1
Substantia nigra
nTPM: 129.3
2699 Male, age 18, unknown 156.4
2665 Male, age 74, both hemispheres 149.6
1916 Female, age 42, unknown 146.2
1889 Female, age 72, unknown 142.1
2241 Male, age 72, unknown 129.1
1851 Male, age 51, unknown 128.7
1941 Male, age 53, unknown 128.3
2590 Female, age 75, unknown 108.9
2409 Female, age 72, unknown 105.0
2583 Male, age 75, right hemisphere 98.8
Superior colliculus
nTPM: 116.4
1895 Male, age 76, right hemisphere 136.8
2587 Male, age 74, left hemisphere 135.8
1913 Female, age 42, unknown 124.9
1839 Male, age 51, unknown 119.7
1995 Male, age 72, unknown 118.3
1796 Male, age 53, unknown 110.3
2664 Male, age 75, both hemispheres 107.5
2261 Male, age 18, unknown 106.4
2087 Female, age 72, unknown 105.3
2668 Female, age 75, unknown 99.2
Ventral tegmental area
nTPM: 125.1
2223 Female, age 72, unknown 142.2
1915 Female, age 42, unknown 137.2
2218 Male, age 76, both hemispheres 124.5
2021 Male, age 53, unknown 121.6
1942 Male, age 51, unknown 113.6
2410 Female, age 72, unknown 111.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 455.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 455.7
Samples: 183

Max nTPM: 860.4
Min nTPM: 188.7
Std nTPM: 113.6
Median nTPM: 445.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 860.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 847.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 779.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 752.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 731.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 713.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 687.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 679.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 671.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 657.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 655.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 172.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 172.6
Samples: 4

Max nTPM: 219.2
Min nTPM: 130.0
Sample A Female 219.2
Sample B Female 175.8
Sample C Male 165.4
Sample D Male 130.0
Midbrain
nTPM: 155.5
Samples: 4

Max nTPM: 174.6
Min nTPM: 137.8
Sample A Female 174.6
Sample B Female 166.5
Sample C Male 137.8
Sample D Male 142.9
Periaqueductal gray
nTPM: 153.0
Samples: 3

Max nTPM: 168.7
Min nTPM: 141.2
Sample B Female 141.2
Sample C Male 168.7
Sample D Male 149.0
Superior colliculi
nTPM: 161.6
Samples: 4

Max nTPM: 210.4
Min nTPM: 123.7
Sample A Female 210.4
Sample B Female 123.7
Sample C Male 172.9
Sample D Male 139.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 126.0
Min nTPM: 98.9
Sample A Male 126.0
Sample B Male 117.6
Sample C Female 98.9
Sample D Female 119.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71763951 Antisense, RP_050921_02_H07, Mouse strain C57BL/6J (56 days, male) 0.1

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