MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:244.8 nTPM
HPA Brain:192.2 nTPM
GTEx:244.8 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:311.6 nTPM
Mouse:167.5 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 192.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.3
2666 Male, age 74, left hemisphere 154.6
2586 Male, age 75, left hemisphere 135.6
2411 Female, age 72, unknown 133.5
1833 Male, age 53, unknown 119.8
2828 Female, age 72, unknown 118.5
1830 Male, age 51, unknown 110.5
1870 Female, age 42, unknown 106.8
1827 Male, age 72, unknown 101.9
2219 Male, age 76, both hemispheres 97.8
2019 Male, age 18, unknown 53.8
Dorsal raphe nucleus
nTPM: 165.7
2298 Female, age 72, unknown 189.6
2047 Male, age 72, unknown 186.2
1828 Male, age 53, unknown 166.9
2750 Male, age 76, both hemispheres 143.3
2016 Female, age 72, unknown 142.5
Inferior colliculus
nTPM: 98.8
2097 Female, age 72, unknown 117.8
1890 Male, age 53, unknown 105.8
1848 Female, age 42, unknown 86.8
2849 Male, age 72, unknown 84.7
Median raphe nucleus
nTPM: 159.4
2220 Male, age 76, midline 159.4
Periaquaductal grey, anterior
nTPM: 192.2
1947 Male, age 18, unknown 255.0
1795 Male, age 51, unknown 190.8
2502 Female, age 75, unknown 130.6
Periaquaductal grey, dorsal
nTPM: 123.6
1831 Male, age 72, unknown 138.0
2850 Male, age 76, both hemispheres 129.5
1840 Male, age 53, unknown 123.6
2464 Female, age 72, unknown 103.4
Periaquaductal grey, lateral
nTPM: 137.4
2272 Male, age 74, both hemispheres 151.7
2053 Male, age 18, unknown 143.0
2140 Male, age 76, both hemispheres 117.4
Pretectal area
nTPM: 104.2
2825 Male, age 18, unknown 167.6
2224 Female, age 72, unknown 137.5
2273 Male, age 74, both hemispheres 130.5
2316 Male, age 76, right hemisphere 105.8
2667 Female, age 75, unknown 97.5
1817 Female, age 42, unknown 96.9
1944 Female, age 72, unknown 91.1
1815 Male, age 53, unknown 83.9
2407 Male, age 75, both hemispheres 82.7
1816 Male, age 51, unknown 76.5
2007 Male, age 72, unknown 76.2
Red nucleus
nTPM: 122.5
2725 Female, age 75, unknown 171.6
2503 Female, age 72, unknown 158.9
2227 Male, age 72, unknown 138.9
2769 Male, age 72, unknown 138.5
1865 Male, age 51, unknown 127.0
1904 Male, age 53, unknown 127.0
1954 Female, age 42, unknown 125.2
1821 Female, age 72, unknown 124.3
2584 Male, age 75, left hemisphere 115.2
2823 Male, age 76, right hemisphere 107.3
2588 Male, age 74, left hemisphere 79.0
2785 Male, age 18, unknown 57.7
Substantia nigra
nTPM: 185.7
2699 Male, age 18, unknown 238.4
1916 Female, age 42, unknown 236.4
1851 Male, age 51, unknown 222.1
2665 Male, age 74, both hemispheres 215.8
2590 Female, age 75, unknown 179.2
2241 Male, age 72, unknown 174.4
2583 Male, age 75, right hemisphere 163.0
2409 Female, age 72, unknown 158.4
1941 Male, age 53, unknown 149.9
1889 Female, age 72, unknown 119.4
Superior colliculus
nTPM: 109.5
2261 Male, age 18, unknown 142.7
2587 Male, age 74, left hemisphere 128.6
1796 Male, age 53, unknown 120.6
2668 Female, age 75, unknown 110.9
1995 Male, age 72, unknown 105.7
1839 Male, age 51, unknown 103.9
2087 Female, age 72, unknown 103.7
2664 Male, age 75, both hemispheres 103.3
1913 Female, age 42, unknown 101.2
1895 Male, age 76, right hemisphere 74.5
Ventral tegmental area
nTPM: 178.3
1915 Female, age 42, unknown 219.7
2410 Female, age 72, unknown 184.6
2021 Male, age 53, unknown 178.9
1942 Male, age 51, unknown 178.2
2218 Male, age 76, both hemispheres 157.2
2223 Female, age 72, unknown 151.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 244.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 244.8
Samples: 183

Max nTPM: 592.8
Min nTPM: 106.7
Std nTPM: 77.4
Median nTPM: 237.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 592.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 486.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 462.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 444.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 444.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 417.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 405.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 389.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 384.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 378.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 377.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 311.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 311.6
Samples: 4

Max nTPM: 414.3
Min nTPM: 190.5
Sample A Female 414.3
Sample B Female 276.5
Sample C Male 364.9
Sample D Male 190.5
Midbrain
nTPM: 249.6
Samples: 4

Max nTPM: 364.0
Min nTPM: 172.8
Sample A Female 364.0
Sample B Female 282.9
Sample C Male 172.8
Sample D Male 178.6
Periaqueductal gray
nTPM: 278.3
Samples: 3

Max nTPM: 373.6
Min nTPM: 215.0
Sample B Female 215.0
Sample C Male 373.6
Sample D Male 246.2
Superior colliculi
nTPM: 216.1
Samples: 4

Max nTPM: 259.9
Min nTPM: 164.3
Sample A Female 259.9
Sample B Female 234.3
Sample C Male 164.3
Sample D Male 205.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 167.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.5
Samples: 4

Max nTPM: 188.6
Min nTPM: 154.6
Sample A Male 188.6
Sample B Male 158.0
Sample C Female 154.6
Sample D Female 168.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74003380 Antisense, RP_051130_01_E06, Mouse strain C57BL/6J (56 days, male) 0.2

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