A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
761.8
nTPM
Monaco:
91.4
nTPM
Schmiedel:
24.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
761.8
HPA sample
nTPM
NK-cell nTPM: 761.8
Samples: 6
Max nTPM: 1000.7
Min nTPM: 420.4
P10809_1013
1000.7
P10809_1033
870.4
P10809_1052
558.1
P10809_1071
849.7
P10809_1093
420.4
P10809_1103
871.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.4
Monaco sample
nTPM
NK-cell nTPM: 91.4
Samples: 4
Max nTPM: 108.2
Min nTPM: 66.5
RHH5316_R3683
97.7
RHH5224_R3596
66.5
RHH5253_R3625
108.2
RHH5282_R3654
93.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Schmiedel sample id
TPM
NK-cell TPM: 24.1
Samples: 90
Max TPM: 37.1
Min TPM: 15.8
NK_1
37.1
NK_2
36.6
NK_3
33.9
NK_4
33.1
NK_5
32.9
NK_6
32.3
NK_7
32.2
NK_8
31.9
NK_9
31.6
NK_10
31.3
NK_11
31.1
NK_12
30.7
NK_13
30.1
NK_14
29.8
NK_15
29.4
NK_16
28.9
NK_17
28.2
NK_18
28.2
NK_19
28.0
NK_20
28.0
NK_21
27.8
NK_22
27.8
NK_23
27.7
NK_24
27.6
NK_25
27.0
NK_26
26.8
NK_27
26.6
NK_28
26.5
NK_29
26.5
NK_30
26.2
NK_31
26.2
NK_32
26.0
NK_33
25.9
NK_34
25.6
NK_35
25.6
NK_36
25.5
NK_37
25.3
NK_38
24.9
NK_39
24.4
NK_40
24.4
NK_41
24.1
NK_42
24.0
NK_43
23.9
NK_44
23.8
NK_45
23.7
NK_46
23.6
NK_47
23.6
NK_48
23.6
NK_49
23.3
NK_50
23.1
NK_51
23.1
NK_52
23.0
NK_53
22.8
NK_54
22.6
NK_55
22.6
NK_56
22.4
NK_57
22.2
NK_58
22.1
NK_59
22.0
NK_60
21.9
NK_61
21.8
NK_62
21.7
NK_63
21.4
NK_64
21.1
NK_65
21.0
NK_66
20.8
NK_67
20.7
NK_68
20.2
NK_69
20.0
NK_70
19.2
NK_71
19.2
NK_72
19.1
NK_73
19.0
NK_74
18.8
NK_75
18.6
NK_76
18.5
NK_77
18.0
NK_78
17.7
NK_79
17.6
NK_80
17.6
NK_81
17.3
NK_82
17.3
NK_83
17.2
NK_84
17.1
NK_85
17.0
NK_86
16.7
NK_87
16.5
NK_88
16.2
NK_89
15.9
NK_90
15.8
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