A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
618.1
nTPM
Monaco:
229.6
nTPM
Schmiedel:
18.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
618.1
HPA sample
nTPM
Classical monocyte nTPM: 563.0
Samples: 6
Max nTPM: 855.3
Min nTPM: 378.6
P10809_1003
855.3
P10809_1020
388.6
P10809_1039
378.6
P10809_1058
603.2
P10809_1080
428.9
P10809_1107
723.2
Intermediate monocyte nTPM: 591.6
Samples: 6
Max nTPM: 1047.8
Min nTPM: 409.6
P10809_1004
409.6
P10809_1023
604.6
P10809_1042
456.2
P10809_1061
473.9
P10809_1081
557.5
P10809_1108
1047.8
Non-classical monocyte nTPM: 618.1
Samples: 5
Max nTPM: 894.7
Min nTPM: 429.7
P10809_1005
537.5
P10809_1053
429.7
P10809_1072
543.3
P10809_1082
685.5
P10809_1109
894.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
229.6
Monaco sample
nTPM
Classical monocyte nTPM: 107.8
Samples: 4
Max nTPM: 134.7
Min nTPM: 57.2
RHH5313_R3680
134.7
RHH5221_R3593
114.3
RHH5250_R3622
57.2
RHH5279_R3651
125.0
Intermediate monocyte nTPM: 229.7
Samples: 4
Max nTPM: 285.6
Min nTPM: 124.9
RHH5314_R3681
251.8
RHH5222_R3594
256.3
RHH5251_R3623
285.6
RHH5280_R3652
124.9
Non-classical monocyte nTPM: 174.3
Samples: 4
Max nTPM: 223.6
Min nTPM: 77.1
RHH5315_R3682
180.2
RHH5223_R3595
223.6
RHH5252_R3624
216.3
RHH5281_R3653
77.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.5
Schmiedel sample id
TPM
Classical monocyte TPM: 13.6
Samples: 91
Max TPM: 18.0
Min TPM: 9.8
MONOCYTES_1
18.0
MONOCYTES_2
17.3
MONOCYTES_3
16.8
MONOCYTES_4
16.7
MONOCYTES_5
16.6
MONOCYTES_6
16.6
MONOCYTES_7
16.4
MONOCYTES_8
16.4
MONOCYTES_9
16.4
MONOCYTES_10
15.8
MONOCYTES_11
15.6
MONOCYTES_12
15.6
MONOCYTES_13
15.4
MONOCYTES_14
15.4
MONOCYTES_15
15.3
MONOCYTES_16
15.3
MONOCYTES_17
15.3
MONOCYTES_18
15.2
MONOCYTES_19
15.1
MONOCYTES_20
15.1
MONOCYTES_21
15.1
MONOCYTES_22
15.0
MONOCYTES_23
15.0
MONOCYTES_24
15.0
MONOCYTES_25
14.9
MONOCYTES_26
14.8
MONOCYTES_27
14.8
MONOCYTES_28
14.8
MONOCYTES_29
14.7
MONOCYTES_30
14.7
MONOCYTES_31
14.7
MONOCYTES_32
14.6
MONOCYTES_33
14.6
MONOCYTES_34
14.5
MONOCYTES_35
14.4
MONOCYTES_36
14.2
MONOCYTES_37
14.2
MONOCYTES_38
14.2
MONOCYTES_39
14.2
MONOCYTES_40
14.0
MONOCYTES_41
14.0
MONOCYTES_42
13.9
MONOCYTES_43
13.7
MONOCYTES_44
13.7
MONOCYTES_45
13.7
MONOCYTES_46
13.7
MONOCYTES_47
13.6
MONOCYTES_48
13.6
MONOCYTES_49
13.5
MONOCYTES_50
13.5
MONOCYTES_51
13.5
MONOCYTES_52
13.4
MONOCYTES_53
13.3
MONOCYTES_54
13.3
MONOCYTES_55
13.3
MONOCYTES_56
13.3
MONOCYTES_57
13.3
MONOCYTES_58
13.1
MONOCYTES_59
13.1
MONOCYTES_60
13.1
MONOCYTES_61
13.0
MONOCYTES_62
13.0
MONOCYTES_63
12.9
MONOCYTES_64
12.8
MONOCYTES_65
12.6
MONOCYTES_66
12.6
MONOCYTES_67
12.5
MONOCYTES_68
12.4
MONOCYTES_69
12.3
MONOCYTES_70
12.3
MONOCYTES_71
12.2
MONOCYTES_72
12.2
MONOCYTES_73
11.7
MONOCYTES_74
11.6
MONOCYTES_75
11.5
MONOCYTES_76
11.5
MONOCYTES_77
11.5
MONOCYTES_78
11.4
MONOCYTES_79
11.2
MONOCYTES_80
10.9
MONOCYTES_81
10.9
MONOCYTES_82
10.7
MONOCYTES_83
10.7
MONOCYTES_84
10.5
MONOCYTES_85
10.4
MONOCYTES_86
10.4
MONOCYTES_87
10.3
MONOCYTES_88
10.2
MONOCYTES_89
10.1
MONOCYTES_90
10.0
MONOCYTES_91
9.8
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Non-classical monocyte TPM: 18.5
Samples: 90
Max TPM: 27.8
Min TPM: 10.9
M2_1
27.8
M2_2
26.2
M2_3
25.5
M2_4
24.5
M2_5
24.5
M2_6
23.8
M2_7
23.8
M2_8
23.4
M2_9
23.3
M2_10
23.2
M2_11
23.0
M2_12
22.9
M2_13
22.7
M2_14
22.4
M2_15
22.4
M2_16
22.0
M2_17
21.6
M2_18
21.5
M2_19
21.3
M2_20
21.1
M2_21
20.8
M2_22
20.7
M2_23
20.6
M2_24
20.3
M2_25
20.2
M2_26
20.2
M2_27
20.1
M2_28
20.0
M2_29
19.7
M2_30
19.5
M2_31
19.3
M2_32
19.3
M2_33
19.2
M2_34
19.2
M2_35
19.1
M2_36
19.0
M2_37
18.9
M2_38
18.9
M2_39
18.8
M2_40
18.7
M2_41
18.5
M2_42
18.5
M2_43
18.1
M2_44
18.1
M2_45
18.0
M2_46
17.8
M2_47
17.8
M2_48
17.7
M2_49
17.7
M2_50
17.7
M2_51
17.6
M2_52
17.6
M2_53
17.6
M2_54
17.6
M2_55
17.4
M2_56
17.4
M2_57
17.4
M2_58
17.3
M2_59
17.3
M2_60
17.1
M2_61
17.0
M2_62
17.0
M2_63
16.9
M2_64
16.6
M2_65
16.5
M2_66
16.4
M2_67
16.2
M2_68
16.2
M2_69
16.1
M2_70
15.9
M2_71
15.9
M2_72
15.7
M2_73
15.6
M2_74
15.6
M2_75
15.4
M2_76
15.3
M2_77
15.2
M2_78
15.2
M2_79
15.1
M2_80
15.0
M2_81
14.9
M2_82
14.8
M2_83
14.4
M2_84
14.3
M2_85
14.0
M2_86
13.5
M2_87
13.4
M2_88
12.7
M2_89
12.3
M2_90
10.9
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