MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:557.4 nTPM
HPA Brain:224.6 nTPM
GTEx:557.4 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:266.0 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 224.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.0
2019 Male, age 18, unknown 199.1
1827 Male, age 72, unknown 195.4
2219 Male, age 76, both hemispheres 176.6
2828 Female, age 72, unknown 175.2
1870 Female, age 42, unknown 173.5
2586 Male, age 75, left hemisphere 171.9
1833 Male, age 53, unknown 160.3
2666 Male, age 74, left hemisphere 157.9
1830 Male, age 51, unknown 155.5
2411 Female, age 72, unknown 154.2
Dorsal raphe nucleus
nTPM: 185.7
2298 Female, age 72, unknown 210.6
1828 Male, age 53, unknown 210.0
2047 Male, age 72, unknown 193.6
2750 Male, age 76, both hemispheres 169.7
2016 Female, age 72, unknown 144.6
Inferior colliculus
nTPM: 190.9
2097 Female, age 72, unknown 199.6
1890 Male, age 53, unknown 195.9
1848 Female, age 42, unknown 191.1
2849 Male, age 72, unknown 177.1
Median raphe nucleus
nTPM: 196.2
2220 Male, age 76, midline 196.2
Periaquaductal grey, anterior
nTPM: 184.8
1947 Male, age 18, unknown 198.6
1795 Male, age 51, unknown 197.2
2502 Female, age 75, unknown 158.6
Periaquaductal grey, dorsal
nTPM: 170.7
2850 Male, age 76, both hemispheres 210.4
1840 Male, age 53, unknown 165.5
1831 Male, age 72, unknown 154.8
2464 Female, age 72, unknown 152.1
Periaquaductal grey, lateral
nTPM: 174.7
2272 Male, age 74, both hemispheres 187.5
2053 Male, age 18, unknown 179.4
2140 Male, age 76, both hemispheres 157.0
Pretectal area
nTPM: 224.6
1817 Female, age 42, unknown 286.2
1816 Male, age 51, unknown 275.3
2007 Male, age 72, unknown 273.3
2667 Female, age 75, unknown 257.7
1944 Female, age 72, unknown 254.3
1815 Male, age 53, unknown 230.9
2224 Female, age 72, unknown 204.1
2273 Male, age 74, both hemispheres 187.9
2407 Male, age 75, both hemispheres 176.8
2825 Male, age 18, unknown 172.4
2316 Male, age 76, right hemisphere 151.6
Red nucleus
nTPM: 181.6
1821 Female, age 72, unknown 256.2
2725 Female, age 75, unknown 213.5
2823 Male, age 76, right hemisphere 204.3
2503 Female, age 72, unknown 187.2
2785 Male, age 18, unknown 184.5
1865 Male, age 51, unknown 174.2
2227 Male, age 72, unknown 170.2
1954 Female, age 42, unknown 167.1
2769 Male, age 72, unknown 166.7
1904 Male, age 53, unknown 156.6
2584 Male, age 75, left hemisphere 149.9
2588 Male, age 74, left hemisphere 148.1
Substantia nigra
nTPM: 211.8
1916 Female, age 42, unknown 274.0
1889 Female, age 72, unknown 244.0
1851 Male, age 51, unknown 227.1
1941 Male, age 53, unknown 218.8
2409 Female, age 72, unknown 214.6
2241 Male, age 72, unknown 212.0
2665 Male, age 74, both hemispheres 209.5
2699 Male, age 18, unknown 200.2
2590 Female, age 75, unknown 164.1
2583 Male, age 75, right hemisphere 153.3
Superior colliculus
nTPM: 183.9
2587 Male, age 74, left hemisphere 216.6
2087 Female, age 72, unknown 207.1
1796 Male, age 53, unknown 200.1
2668 Female, age 75, unknown 193.4
1895 Male, age 76, right hemisphere 192.0
2261 Male, age 18, unknown 182.9
1839 Male, age 51, unknown 172.2
1913 Female, age 42, unknown 163.5
1995 Male, age 72, unknown 161.0
2664 Male, age 75, both hemispheres 150.6
Ventral tegmental area
nTPM: 190.9
2218 Male, age 76, both hemispheres 224.9
1915 Female, age 42, unknown 213.4
2410 Female, age 72, unknown 201.1
2223 Female, age 72, unknown 182.4
2021 Male, age 53, unknown 167.7
1942 Male, age 51, unknown 156.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 557.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 557.4
Samples: 183

Max nTPM: 1033.7
Min nTPM: 235.2
Std nTPM: 147.5
Median nTPM: 539.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1033.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 933.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 933.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 930.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 921.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 903.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 875.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 865.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 842.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 842.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 816.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.3
Samples: 4

Max nTPM: 107.4
Min nTPM: 47.6
Sample A Female 107.4
Sample B Female 69.7
Sample C Male 84.5
Sample D Male 47.6
Midbrain
nTPM: 84.1
Samples: 4

Max nTPM: 93.1
Min nTPM: 70.2
Sample A Female 90.0
Sample B Female 70.2
Sample C Male 93.1
Sample D Male 83.2
Periaqueductal gray
nTPM: 64.6
Samples: 3

Max nTPM: 78.6
Min nTPM: 51.9
Sample B Female 63.2
Sample C Male 78.6
Sample D Male 51.9
Superior colliculi
nTPM: 92.0
Samples: 4

Max nTPM: 126.2
Min nTPM: 66.0
Sample A Female 126.2
Sample B Female 66.0
Sample C Male 101.0
Sample D Male 74.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 266.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.0
Samples: 4

Max nTPM: 294.7
Min nTPM: 238.5
Sample A Male 294.7
Sample B Male 247.2
Sample C Female 238.5
Sample D Female 283.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
75198094 Antisense, RP_060502_01_F10, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo