We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5MF
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATP5MF
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:352.1 nTPM
HPA Brain:212.9 nTPM
GTEx:352.1 nTPM
FANTOM5:111.9 Scaled Tags Per Million
Pig:80.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.5
1981 Female, age 72, midline 238.5
2194 Female, age 79, both hemispheres 200.4
2565 Male, age 75, midline 186.7
2048 Male, age 55, midline 185.0
2816 Male, age 47, midline 161.7
Cervical spinal cord, dorsal horn
nTPM: 212.9
2173 Female, age 72, unknown 240.5
2069 Male, age 47, both hemispheres 238.8
2721 Male, age 90, both hemispheres 229.2
2296 Male, age 66, both hemispheres 199.5
1877 Male, age 55, unknown 186.3
2297 Male, age 75, both hemispheres 182.9
Cervical spinal cord, ventral horn
nTPM: 178.5
2098 Female, age 72, unknown 212.5
2068 Male, age 55, unknown 185.1
2480 Male, age 75, both hemispheres 177.7
2809 Male, age 90, both hemispheres 174.1
2820 Female, age 79, both hemispheres 166.1
2295 Male, age 66, both hemispheres 155.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 352.1
Samples: 204

Max nTPM: 719.6
Min nTPM: 169.3
Std nTPM: 88.0
Median nTPM: 343.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 719.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 661.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 629.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 613.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 586.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 564.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 546.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 531.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 520.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 506.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 502.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 500.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 499.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 498.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 492.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 468.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 467.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 462.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 452.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 449.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 449.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 444.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 443.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 441.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 438.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 437.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 437.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 435.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 435.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 434.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 432.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 428.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 428.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 421.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 418.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 416.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 414.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 414.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 413.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 412.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 412.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 410.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 410.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 409.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 409.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 409.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 408.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 408.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 408.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 407.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 407.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 405.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 403.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 401.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 401.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 398.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 398.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 397.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 393.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 391.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 388.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 387.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 387.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 386.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 386.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 384.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 383.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 380.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 379.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 378.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 378.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 377.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 376.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 373.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 373.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 371.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 370.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 370.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 368.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 368.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 367.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 366.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 366.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 366.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 365.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 364.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 364.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 361.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 358.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 355.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 355.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 354.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 353.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 351.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 350.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 349.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 349.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 349.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 347.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 346.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 346.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 343.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 343.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 341.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 340.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 339.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 338.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 336.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 334.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 334.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 333.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 333.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 331.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 330.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 329.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 328.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 328.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 328.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 327.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 327.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 326.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 325.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 324.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 324.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 322.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 322.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 320.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 314.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 314.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 313.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 313.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 312.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 311.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 310.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 309.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 307.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 304.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 304.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 303.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 303.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 303.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 300.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 300.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 299.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 299.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 297.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 297.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 297.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 295.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 295.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 293.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 293.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 291.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 290.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 290.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 289.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 289.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 288.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 284.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 283.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 281.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 281.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 281.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 280.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 279.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 277.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 276.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 275.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 275.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 273.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 273.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 269.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 265.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 264.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 263.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 261.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 260.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 259.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 259.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 257.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 251.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 250.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 248.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 246.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 243.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 242.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 242.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 241.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 240.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 239.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 236.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 236.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 235.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 232.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 231.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 230.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 224.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 224.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 212.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 195.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 192.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 186.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 169.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 111.9
FF:10181-103D1 60 years, female 147.7
FF:10159-103A6 76 years, female 76.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 70.1
Samples: 4

Max nTPM: 74.9
Min nTPM: 64.4
Sample A Female 74.9
Sample B Female 69.6
Sample C Male 71.5
Sample D Male 64.4
Ventral spinal cord
nTPM: 80.7
Samples: 4

Max nTPM: 91.9
Min nTPM: 67.7
Sample A Female 74.5
Sample B Female 91.9
Sample C Male 88.7
Sample D Male 67.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo