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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:690.1 nTPM
HPA Brain:211.6 nTPM
GTEx:690.1 nTPM
FANTOM5:120.6 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:278.4 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.6
Sample id Sample description nTPM
Amygdala
nTPM: 211.6
2814 Male, age 76, right hemisphere 278.4
2514 Male, age 75, right hemisphere 230.0
1987 Female, age 91, left hemisphere 199.7
2695 Female, age 67, right hemisphere 196.4
2517 Female, age 94, left hemisphere 153.5
Basal amygdala
nTPM: 180.2
2243 Female, age 91, right hemisphere 218.7
2609 Male, age 75, right hemisphere 209.9
1955 Male, age 76, both hemispheres 203.9
2110 Male, age 80, left hemisphere 182.1
2685 Female, age 94, left hemisphere 172.5
2827 Female, age 67, right hemisphere 93.9
Central amygdala
nTPM: 182.4
1905 Male, age 76, both hemispheres 241.1
2239 Male, age 80, left hemisphere 181.8
2701 Female, age 91, right hemisphere 175.8
2515 Male, age 75, right hemisphere 173.1
2826 Female, age 94, left hemisphere 139.9
Corticomedial amygdala
nTPM: 192.7
2829 Male, age 80, left hemisphere 223.3
2240 Male, age 76, both hemispheres 207.2
2428 Male, age 75, right hemisphere 205.0
2242 Female, age 91, right hemisphere 203.0
2429 Female, age 94, left hemisphere 193.9
2535 Female, age 67, right hemisphere 124.0
Lateral amygdala
nTPM: 161.8
1883 Male, age 76, both hemispheres 230.2
2516 Male, age 75, right hemisphere 207.8
2534 Female, age 94, left hemisphere 156.0
2255 Female, age 91, right hemisphere 149.8
2256 Male, age 80, left hemisphere 122.0
2830 Female, age 67, right hemisphere 104.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

690.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 690.1
Samples: 181

Max nTPM: 2363.1
Min nTPM: 302.7
Std nTPM: 278.8
Median nTPM: 639.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2363.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1796.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1782.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1668.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1585.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1262.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1242.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1143.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1121.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1109.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1086.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1075.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1064.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1040.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1032.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1028.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1015.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1008.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1008.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1000.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 999.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 972.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 960.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 956.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 950.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 924.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 915.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 906.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 899.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 898.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 884.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 879.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 875.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 868.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 864.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 850.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 840.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 833.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 827.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 824.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 798.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 790.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 787.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 784.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 777.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 774.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 769.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 759.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 756.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 753.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 750.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 726.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 725.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 724.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 717.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 716.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 710.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 710.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 709.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 708.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 705.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 705.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 703.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 700.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 698.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 698.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 695.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 695.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 695.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 693.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 691.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 685.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 683.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 679.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 679.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 679.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 677.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 671.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 665.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 659.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 659.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 658.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 658.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 651.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 649.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 647.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 643.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 642.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 641.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 639.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 639.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 639.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 637.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 636.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 634.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 632.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 630.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 627.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 626.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 626.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 620.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 617.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 610.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 607.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 606.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 604.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 603.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 603.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 595.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 592.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 589.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 586.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 585.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 584.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 581.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 578.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 569.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 567.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 562.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 562.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 561.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 559.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 550.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 548.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 546.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 543.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 539.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 536.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 531.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 526.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 526.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 526.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 526.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 522.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 521.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 519.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 515.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 513.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 511.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 510.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 505.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 492.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 491.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 487.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 487.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 485.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 485.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 483.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 482.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 479.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 477.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 475.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 475.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 471.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 460.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 459.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 458.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 455.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 445.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 444.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 443.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 440.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 439.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 433.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 428.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 418.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 409.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 401.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 398.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 398.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 382.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 370.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 361.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 356.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 355.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 350.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 349.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 338.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 335.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 323.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 302.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

120.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 120.6
FF:10151-102I7 76 years, female 120.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.3
Pig sample Sample description nTPM
Amygdala
nTPM: 61.3
Samples: 4

Max nTPM: 82.1
Min nTPM: 48.2
Sample A Female 82.1
Sample B Female 59.7
Sample C Male 55.3
Sample D Male 48.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 278.4
Samples: 4

Max nTPM: 299.3
Min nTPM: 250.0
Sample A Male 250.0
Sample B Male 291.7
Sample C Female 299.3
Sample D Female 272.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
75198094 Antisense, RP_060502_01_F10, Mouse strain C57BL/6J (56 days, male) 2.0

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