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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:203.2 nTPM
GTEx:203.2 nTPM
FANTOM5:128.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 203.2
Samples: 105

Max nTPM: 281.4
Min nTPM: 131.0
Std nTPM: 30.9
Median nTPM:
414_1 84 years, female 281.4
153_1 70 years, female 276.8
35_1 74 years, female 272.1
413_1 59 years, female 269.7
17_1 71 years, male 263.3
246_1 77 years, male 255.6
126_1 63 years, male 254.3
375_1 74 years, female 249.6
490_1 67 years, female 248.3
237_1 82 years, male 243.7
377_1 82 years, female 242.7
466_1 57 years, female 241.3
81_1 67 years, male 238.5
43_1 64 years, female 234.2
468_1 89 years, male 233.7
120_1 70 years, female 233.1
316_1 62 years, male 232.7
18_1 88 years, male 231.4
6_1 73 years, female 230.8
229_1 69 years, female 229.1
415_1 77 years, female 228.1
162_1 79 years, female 227.4
115_1 83 years, male 226.2
142_1 61 years, female 225.8
265_1 87 years, male 224.4
217_1 76 years, male 223.8
495_1 57 years, female 223.8
189_1 76 years, male 223.7
145_1 84 years, male 221.6
319_1 81 years, male 219.8
396_1 62 years, male 219.4
2_1 77 years, female 219.3
149_1 88 years, male 218.6
322_1 76 years, male 217.8
4_1 88 years, female 217.3
501_1 88 years, male 215.7
376_1 75 years, female 215.5
389_1 86 years, female 215.1
386_1 76 years, male 214.7
447_1 81 years, male 213.6
117_1 61 years, male 213.2
266_1 85 years, male 212.7
518_1 75 years, female 212.7
394_1 75 years, female 210.2
491_1 89 years, female 210.0
139_1 64 years, female 209.9
321_1 62 years, female 209.4
42_1 85 years, male 208.3
379_1 60 years, male 206.4
526_1 61 years, male 206.3
355_1 70 years, female 203.3
315_1 62 years, female 202.9
404_1 82 years, female 202.7
384_1 83 years, male 202.4
405_1 91 years, male 201.2
499_1 55 years, female 199.2
324_1 76 years, male 198.5
254_1 77 years, female 197.5
335_1 73 years, female 197.3
218_1 71 years, female 197.2
320_1 89 years, female 195.6
406_1 79 years, male 195.1
251_1 78 years, male 193.9
163_1 78 years, male 193.1
243_1 75 years, male 191.5
172_1 72 years, female 190.9
350_1 84 years, female 189.7
307_1 66 years, female 189.5
506_1 65 years, male 188.3
311_1 78 years, male 187.6
354_1 81 years, female 185.8
425_1 59 years, female 185.5
286_1 68 years, female 185.2
480_1 63 years, male 184.8
109_1 81 years, female 184.1
308_1 70 years, female 183.8
348_1 84 years, male 183.5
173_1 67 years, male 183.3
32_1 67 years, male 182.9
137_1 83 years, male 182.9
313_1 79 years, female 182.1
177_1 74 years, male 180.6
288_1 66 years, female 179.2
9_1 66 years, female 177.2
318_1 68 years, male 175.8
264_1 73 years, female 175.5
119_1 70 years, female 173.9
503_1 68 years, male 173.7
291_1 76 years, male 172.2
517_1 88 years, male 171.9
89_1 63 years, male 171.5
352_1 62 years, male 168.9
347_1 72 years, male 168.8
349_1 83 years, male 167.4
356_1 87 years, female 164.8
452_1 88 years, female 162.8
292_1 71 years, male 160.2
351_1 91 years, male 158.4
353_1 82 years, female 155.1
295_1 61 years, female 154.6
317_1 60 years, male 154.4
314_1 67 years, male 149.2
293_1 68 years, female 142.8
41_1 94 years, female 134.4
99_1 64 years, male 131.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 128.0
FF:10030-101E3 24-65 years, mixed 128.0

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