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  • ATP5PO
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:357.6 nTPM
HPA Brain:124.8 nTPM
GTEx:357.6 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:487.0 nTPM
Allen mouse:18.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.8
Sample id Sample description nTPM
Amygdala
nTPM: 124.8
2814 Male, age 76, right hemisphere 152.4
2514 Male, age 75, right hemisphere 126.9
2695 Female, age 67, right hemisphere 119.5
1987 Female, age 91, left hemisphere 117.6
2517 Female, age 94, left hemisphere 107.9
Basal amygdala
nTPM: 99.4
2609 Male, age 75, right hemisphere 118.4
2110 Male, age 80, left hemisphere 102.8
1955 Male, age 76, both hemispheres 102.4
2685 Female, age 94, left hemisphere 101.4
2243 Female, age 91, right hemisphere 98.9
2827 Female, age 67, right hemisphere 72.7
Central amygdala
nTPM: 111.8
1905 Male, age 76, both hemispheres 136.4
2826 Female, age 94, left hemisphere 126.3
2515 Male, age 75, right hemisphere 112.7
2239 Male, age 80, left hemisphere 96.7
2701 Female, age 91, right hemisphere 87.0
Corticomedial amygdala
nTPM: 102.3
2829 Male, age 80, left hemisphere 123.0
2428 Male, age 75, right hemisphere 116.0
2429 Female, age 94, left hemisphere 115.9
2242 Female, age 91, right hemisphere 98.0
2240 Male, age 76, both hemispheres 97.8
2535 Female, age 67, right hemisphere 63.1
Lateral amygdala
nTPM: 99.8
1883 Male, age 76, both hemispheres 134.9
2516 Male, age 75, right hemisphere 134.0
2534 Female, age 94, left hemisphere 112.6
2830 Female, age 67, right hemisphere 80.3
2255 Female, age 91, right hemisphere 70.3
2256 Male, age 80, left hemisphere 66.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 357.6
Samples: 181

Max nTPM: 1438.7
Min nTPM: 174.9
Std nTPM: 142.1
Median nTPM: 321.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1438.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 907.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 848.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 826.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 665.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 642.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 614.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 612.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 601.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 601.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 568.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 568.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 539.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 528.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 527.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 524.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 521.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 509.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 506.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 502.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 494.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 492.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 488.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 481.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 476.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 466.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 464.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 449.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 445.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 443.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 440.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 439.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 435.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 419.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 419.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 418.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 416.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 416.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 415.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 414.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 412.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 412.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 411.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 411.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 407.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 400.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 393.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 393.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 393.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 383.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 381.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 381.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 375.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 374.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 373.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 371.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 370.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 370.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 368.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 368.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 366.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 365.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 362.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 359.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 358.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 357.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 355.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 352.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 350.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 350.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 345.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 345.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 343.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 342.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 341.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 340.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 337.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 336.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 336.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 335.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 335.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 334.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 331.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 331.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 330.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 329.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 325.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 325.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 325.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 324.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 321.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 320.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 319.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 318.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 316.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 316.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 316.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 315.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 313.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 313.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 311.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 311.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 310.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 310.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 309.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 308.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 307.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 303.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 303.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 302.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 300.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 299.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 298.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 296.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 296.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 296.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 296.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 295.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 292.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 291.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 289.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 289.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 288.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 286.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 286.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 286.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 285.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 283.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 281.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 281.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 279.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 279.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 279.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 279.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 278.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 277.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 274.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 274.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 272.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 271.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 269.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 269.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 267.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 267.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 267.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 267.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 266.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 264.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 262.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 261.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 261.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 259.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 253.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 252.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 252.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 251.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 250.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 249.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 247.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 247.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 247.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 244.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 243.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 242.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 242.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 238.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 237.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 235.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 235.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 234.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 232.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 231.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 230.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 227.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 211.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 200.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 197.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 191.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 187.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 178.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 174.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 108.5
FF:10151-102I7 76 years, female 108.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.5
Pig sample Sample description nTPM
Amygdala
nTPM: 3.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 3.3
Sample C Male 4.4
Sample D Male 3.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 487.1
Samples: 4

Max nTPM: 495.5
Min nTPM: 476.8
Sample A Male 481.0
Sample B Male 494.9
Sample C Female 495.5
Sample D Female 476.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.0
576416 Antisense, RP_040826_01_G02, Mouse strain C57BL/6J (56 days, male) 22.4
1159 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 13.6
1158 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 10.8

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