MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1577.7 nTPM
HPA Brain:410.0 nTPM
GTEx:1577.7 nTPM
FANTOM5:318.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 410.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.9
2219 Male, age 76, both hemispheres 859.1
2828 Female, age 72, unknown 195.4
2586 Male, age 75, left hemisphere 182.3
2411 Female, age 72, unknown 158.5
2019 Male, age 18, unknown 148.6
1830 Male, age 51, unknown 143.1
1833 Male, age 53, unknown 135.3
1870 Female, age 42, unknown 112.1
2666 Male, age 74, left hemisphere 108.5
1827 Male, age 72, unknown 86.4
Dorsal raphe nucleus
nTPM: 229.6
2298 Female, age 72, unknown 728.4
1828 Male, age 53, unknown 125.7
2016 Female, age 72, unknown 116.7
2750 Male, age 76, both hemispheres 111.6
2047 Male, age 72, unknown 65.6
Inferior colliculus
nTPM: 107.2
1890 Male, age 53, unknown 155.4
2097 Female, age 72, unknown 99.1
1848 Female, age 42, unknown 96.9
2849 Male, age 72, unknown 77.6
Median raphe nucleus
nTPM: 133.8
2220 Male, age 76, midline 133.8
Periaquaductal grey, anterior
nTPM: 110.2
2502 Female, age 75, unknown 159.6
1795 Male, age 51, unknown 94.6
1947 Male, age 18, unknown 76.4
Periaquaductal grey, dorsal
nTPM: 113.6
1831 Male, age 72, unknown 205.5
2464 Female, age 72, unknown 103.8
2850 Male, age 76, both hemispheres 88.2
1840 Male, age 53, unknown 56.9
Periaquaductal grey, lateral
nTPM: 80.8
2053 Male, age 18, unknown 92.1
2272 Male, age 74, both hemispheres 85.1
2140 Male, age 76, both hemispheres 65.2
Pretectal area
nTPM: 109.1
1817 Female, age 42, unknown 144.6
2316 Male, age 76, right hemisphere 139.8
1816 Male, age 51, unknown 131.2
2667 Female, age 75, unknown 122.4
2007 Male, age 72, unknown 115.6
2825 Male, age 18, unknown 111.4
1815 Male, age 53, unknown 110.5
2407 Male, age 75, both hemispheres 86.4
2273 Male, age 74, both hemispheres 83.6
2224 Female, age 72, unknown 79.2
1944 Female, age 72, unknown 75.2
Red nucleus
nTPM: 172.7
1904 Male, age 53, unknown 301.5
1821 Female, age 72, unknown 281.8
2227 Male, age 72, unknown 208.2
2769 Male, age 72, unknown 205.0
2503 Female, age 72, unknown 164.9
1865 Male, age 51, unknown 160.2
2823 Male, age 76, right hemisphere 146.2
1954 Female, age 42, unknown 130.4
2588 Male, age 74, left hemisphere 130.4
2785 Male, age 18, unknown 122.5
2584 Male, age 75, left hemisphere 111.9
2725 Female, age 75, unknown 109.4
Substantia nigra
nTPM: 179.1
1851 Male, age 51, unknown 270.5
2665 Male, age 74, both hemispheres 263.4
2699 Male, age 18, unknown 263.3
2241 Male, age 72, unknown 229.0
1916 Female, age 42, unknown 168.2
2409 Female, age 72, unknown 156.3
2583 Male, age 75, right hemisphere 113.2
1941 Male, age 53, unknown 111.3
1889 Female, age 72, unknown 108.3
2590 Female, age 75, unknown 107.5
Superior colliculus
nTPM: 125.7
2587 Male, age 74, left hemisphere 191.4
2668 Female, age 75, unknown 157.9
1995 Male, age 72, unknown 144.7
1895 Male, age 76, right hemisphere 141.8
1796 Male, age 53, unknown 127.9
2261 Male, age 18, unknown 127.0
1839 Male, age 51, unknown 111.8
1913 Female, age 42, unknown 105.8
2087 Female, age 72, unknown 100.0
2664 Male, age 75, both hemispheres 48.4
Ventral tegmental area
nTPM: 410.0
2218 Male, age 76, both hemispheres 600.5
1915 Female, age 42, unknown 595.6
2021 Male, age 53, unknown 482.8
2410 Female, age 72, unknown 272.5
1942 Male, age 51, unknown 264.4
2223 Female, age 72, unknown 243.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1577.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1577.7
Samples: 183

Max nTPM: 26088.9
Min nTPM: 48.5
Std nTPM: 2708.7
Median nTPM: 779.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26088.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 15800.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9619.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 9144.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8262.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 7964.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 7237.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 7128.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 7097.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5931.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 5756.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 318.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 318.8
FF:10158-103A5 76 years, female 318.8

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