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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:883.9 nTPM
HPA Brain:486.6 nTPM
GTEx:883.9 nTPM
FANTOM5:1838.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

486.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 374.7
1981 Female, age 72, midline 583.4
2048 Male, age 55, midline 395.9
2816 Male, age 47, midline 371.6
2194 Female, age 79, both hemispheres 278.9
2565 Male, age 75, midline 243.5
Cervical spinal cord, dorsal horn
nTPM: 486.6
2296 Male, age 66, both hemispheres 1002.0
2173 Female, age 72, unknown 718.1
2069 Male, age 47, both hemispheres 579.6
1877 Male, age 55, unknown 296.3
2721 Male, age 90, both hemispheres 170.1
2297 Male, age 75, both hemispheres 153.6
Cervical spinal cord, ventral horn
nTPM: 399.6
2098 Female, age 72, unknown 726.9
2068 Male, age 55, unknown 496.1
2480 Male, age 75, both hemispheres 354.6
2809 Male, age 90, both hemispheres 294.7
2295 Male, age 66, both hemispheres 294.3
2820 Female, age 79, both hemispheres 231.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

883.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 883.9
Samples: 204

Max nTPM: 2158.3
Min nTPM: 198.7
Std nTPM: 377.4
Median nTPM: 838.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 2158.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2130.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2049.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1993.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1924.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1819.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1605.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1594.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1582.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1556.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1538.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1511.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1508.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1504.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1460.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1447.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1417.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1377.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1375.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1372.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1359.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1359.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1332.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1328.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1315.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1313.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1309.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1290.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1288.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1279.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1272.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1271.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1270.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1249.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1237.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1228.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1210.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1205.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1151.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1149.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1143.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1133.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1131.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1126.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1122.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1119.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1117.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1111.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1109.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1096.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1091.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1089.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1085.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1082.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1075.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1070.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1069.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1053.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1053.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1046.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1046.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1029.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1023.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1023.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1019.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1013.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1005.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1001.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 998.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 997.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 996.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 995.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 985.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 985.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 979.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 978.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 974.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 973.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 956.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 950.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 944.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 943.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 942.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 941.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 939.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 933.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 933.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 927.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 923.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 922.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 920.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 919.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 911.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 904.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 903.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 896.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 881.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 864.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 854.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 850.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 845.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 839.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 838.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 836.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 826.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 814.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 812.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 811.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 808.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 808.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 799.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 789.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 787.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 787.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 786.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 774.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 771.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 767.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 767.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 754.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 751.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 751.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 749.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 748.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 744.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 741.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 739.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 732.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 728.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 720.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 718.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 716.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 714.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 712.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 710.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 706.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 699.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 697.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 694.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 688.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 686.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 685.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 679.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 676.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 675.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 675.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 668.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 663.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 662.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 656.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 649.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 649.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 641.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 619.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 615.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 612.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 602.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 601.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 588.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 580.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 571.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 562.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 561.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 557.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 553.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 552.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 549.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 540.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 536.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 528.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 521.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 518.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 518.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 506.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 499.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 489.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 488.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 477.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 462.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 428.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 408.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 407.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 403.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 391.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 389.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 384.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 380.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 375.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 373.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 373.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 372.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 364.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 359.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 337.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 335.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 334.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 314.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 299.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 295.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 293.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 251.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 201.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 198.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 198.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1838.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1838.8
FF:10159-103A6 76 years, female 2043.9
FF:10181-103D1 60 years, female 1633.6

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