On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
297.2
nTPM
HPA Brain:
500.9
nTPM
GTEx:
297.2
nTPM
FANTOM5:
2495.1
Scaled Tags Per Million
Mouse:
238.4
nTPM
Rat:
291.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
500.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 321.7
2019
Male, age 18, unknown
488.4
1870
Female, age 42, unknown
456.9
2411
Female, age 72, unknown
441.9
1830
Male, age 51, unknown
396.2
1833
Male, age 53, unknown
364.8
2828
Female, age 72, unknown
331.2
2219
Male, age 76, both hemispheres
239.8
1827
Male, age 72, unknown
185.8
2666
Male, age 74, left hemisphere
162.6
2586
Male, age 75, left hemisphere
149.1
Dorsal raphe nucleus nTPM: 300.8
2750
Male, age 76, both hemispheres
615.0
1828
Male, age 53, unknown
260.2
2016
Female, age 72, unknown
244.4
2298
Female, age 72, unknown
206.2
2047
Male, age 72, unknown
178.0
Inferior colliculus nTPM: 224.6
1848
Female, age 42, unknown
247.5
1890
Male, age 53, unknown
241.0
2097
Female, age 72, unknown
230.9
2849
Male, age 72, unknown
178.9
Median raphe nucleus nTPM: 380.3
2220
Male, age 76, midline
380.3
Periaquaductal grey, anterior nTPM: 201.1
2502
Female, age 75, unknown
257.5
1947
Male, age 18, unknown
185.7
1795
Male, age 51, unknown
160.1
Periaquaductal grey, dorsal nTPM: 156.0
2464
Female, age 72, unknown
227.5
1831
Male, age 72, unknown
155.2
2850
Male, age 76, both hemispheres
121.4
1840
Male, age 53, unknown
119.8
Periaquaductal grey, lateral nTPM: 197.2
2272
Male, age 74, both hemispheres
235.0
2053
Male, age 18, unknown
195.1
2140
Male, age 76, both hemispheres
161.4
Pretectal area nTPM: 212.4
2273
Male, age 74, both hemispheres
284.5
2316
Male, age 76, right hemisphere
277.1
1815
Male, age 53, unknown
265.8
2667
Female, age 75, unknown
249.0
1817
Female, age 42, unknown
240.5
2007
Male, age 72, unknown
213.4
2224
Female, age 72, unknown
194.9
2825
Male, age 18, unknown
193.3
2407
Male, age 75, both hemispheres
160.8
1944
Female, age 72, unknown
132.5
1816
Male, age 51, unknown
125.0
Red nucleus nTPM: 500.9
1821
Female, age 72, unknown
662.1
1865
Male, age 51, unknown
643.9
1904
Male, age 53, unknown
605.7
2227
Male, age 72, unknown
594.4
2823
Male, age 76, right hemisphere
587.8
2769
Male, age 72, unknown
585.9
1954
Female, age 42, unknown
550.4
2785
Male, age 18, unknown
502.5
2503
Female, age 72, unknown
477.5
2588
Male, age 74, left hemisphere
300.4
2725
Female, age 75, unknown
273.7
2584
Male, age 75, left hemisphere
227.0
Substantia nigra nTPM: 252.7
1851
Male, age 51, unknown
340.3
2409
Female, age 72, unknown
305.5
1889
Female, age 72, unknown
295.4
2241
Male, age 72, unknown
283.9
2699
Male, age 18, unknown
259.1
1916
Female, age 42, unknown
246.6
2590
Female, age 75, unknown
242.2
2583
Male, age 75, right hemisphere
217.9
1941
Male, age 53, unknown
211.5
2665
Male, age 74, both hemispheres
124.6
Superior colliculus nTPM: 261.0
2587
Male, age 74, left hemisphere
400.7
1913
Female, age 42, unknown
395.8
1995
Male, age 72, unknown
373.9
1895
Male, age 76, right hemisphere
277.3
2668
Female, age 75, unknown
265.0
1839
Male, age 51, unknown
255.8
1796
Male, age 53, unknown
213.6
2087
Female, age 72, unknown
186.5
2261
Male, age 18, unknown
145.4
2664
Male, age 75, both hemispheres
96.0
Ventral tegmental area nTPM: 378.3
2223
Female, age 72, unknown
666.0
2410
Female, age 72, unknown
453.0
2218
Male, age 76, both hemispheres
365.6
2021
Male, age 53, unknown
271.6
1942
Male, age 51, unknown
264.5
1915
Female, age 42, unknown
249.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
297.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 297.2
Samples: 183
Max nTPM: 1547.6
Min nTPM: 21.9
Std nTPM: 174.4
Median nTPM: 255.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1547.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
886.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
854.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
758.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
730.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
692.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
690.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
653.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
602.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
598.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
588.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
583.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
530.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
524.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
516.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
501.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
495.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
477.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
470.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
463.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
460.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
460.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
455.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
446.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
444.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
438.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
436.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
431.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
426.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
419.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
417.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
416.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
415.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
414.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
411.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
408.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
404.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
401.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
400.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
398.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
386.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
385.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
384.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
383.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
378.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
378.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
375.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
371.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
361.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
358.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
358.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
356.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
351.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
349.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
345.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
343.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
336.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
331.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
331.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
328.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
326.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
322.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
318.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
312.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
303.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
303.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
301.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
300.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
295.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
292.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
292.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
285.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
283.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
277.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
274.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
274.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
272.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
271.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
269.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
268.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
266.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
266.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
266.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
266.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
265.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
263.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
263.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
262.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
260.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
256.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
255.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
255.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
251.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
249.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
248.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
245.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
245.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
244.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
240.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
237.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
236.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
233.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
231.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
230.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
228.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
225.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
225.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
223.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
219.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
217.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
217.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
216.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
214.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
213.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
212.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
209.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
208.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
208.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
208.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
208.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
207.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
206.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
206.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
206.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
205.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
204.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
204.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
204.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
203.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
202.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
200.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
197.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
196.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
196.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
195.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
193.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
191.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
190.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
189.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
188.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
182.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
181.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
181.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
178.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
178.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
178.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
174.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
173.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
170.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
170.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
169.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
167.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
166.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
165.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
165.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
165.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
160.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
159.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
158.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
157.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
156.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
153.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
146.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
145.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
145.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
143.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
140.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
135.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
131.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
131.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
131.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
128.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
127.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
127.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
122.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
110.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
108.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
104.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
100.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
92.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
91.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
88.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
21.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
238.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 238.4
Samples: 4
Max nTPM: 255.8
Min nTPM: 200.8
Sample A
244.8
Sample B
200.8
Sample C
252.3
Sample D
255.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
291.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 291.3
Samples: 4
Max nTPM: 305.3
Min nTPM: 274.2
Sample A
274.2
Sample A
289.1
Sample A
296.7
Sample A
305.3
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The Human Protein Atlas project is funded
