HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:564.9 nTPM
HPA Brain:287.2 nTPM
GTEx:564.9 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:227.2 nTPM
Mouse:296.5 nTPM
Allen mouse:17.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040688Antibody HPA055316
Glial cells Not detectedNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 287.2
Sample id Sample description nTPM
Hippocampus
nTPM: 287.2
1898 Male, age 80, left hemisphere 336.5
2529 Female, age 94, left hemisphere 299.7
2621 Female, age 67, right hemisphere 282.8
2148 Female, age 91, left hemisphere 281.9
1855 Male, age 76, left hemisphere 270.2
1911 Female, age 85, right hemisphere 252.3
Dentate gyrus
nTPM: 269.8
2530 Female, age 94, left hemisphere 311.8
2010 Male, age 76, both hemispheres 290.6
2528 Male, age 74, both hemispheres 263.7
2246 Female, age 85, both hemispheres 256.1
2531 Female, age 67, both hemispheres 255.1
1927 Female, age 91, both hemispheres 241.7
Entorhinal gyrus
nTPM: 268.9
2686 Male, age 75, right hemisphere 346.4
2117 Female, age 91, right hemisphere 307.1
1787 Male, age 76, left hemisphere 248.2
1938 Female, age 85, left hemisphere 245.2
2764 Male, age 80, right hemisphere 243.3
2613 Female, age 94, left hemisphere 223.5
Hippocampus, CA1
nTPM: 265.8
2045 Male, age 76, both hemispheres 279.0
1873 Female, age 85, both hemispheres 277.2
2082 Female, age 91, right hemisphere 271.1
2527 Male, age 74, both hemispheres 259.9
2749 Male, age 80, left hemisphere 241.9
Hippocampus, CA2
nTPM: 272.2
1963 Male, age 80, left hemisphere 326.6
1892 Male, age 76, both hemispheres 278.5
2113 Female, age 91, right hemisphere 275.3
2437 Female, age 94, left hemisphere 258.2
1940 Female, age 85, left hemisphere 248.0
2249 Male, age 74, both hemispheres 246.4
Hippocampus, CA3
nTPM: 258.5
2861 Female, age 67, both hemispheres 286.4
1867 Male, age 76, both hemispheres 284.8
2436 Male, age 74, both hemispheres 270.6
1891 Female, age 85, both hemispheres 268.4
2620 Female, age 94, left hemisphere 222.6
2137 Male, age 80, left hemisphere 218.2
Parahippocampal cortex
nTPM: 238.0
2018 Male, age 76, both hemispheres 296.6
1990 Female, age 91, right hemisphere 249.5
1850 Male, age 80, both hemispheres 248.3
2245 Female, age 91, both hemispheres 243.8
2692 Male, age 74, both hemispheres 243.5
2250 Female, age 67, right hemisphere 236.2
1933 Female, age 85, both hemispheres 232.9
2622 Female, age 67, right hemisphere 226.2
2532 Female, age 72, left hemisphere 210.7
2693 Female, age 94, both hemispheres 192.2
Perirhinal gyrus
nTPM: 246.2
1847 Female, age 91, left hemisphere 297.3
1841 Female, age 85, right hemisphere 243.0
1794 Male, age 80, right hemisphere 237.7
2521 Female, age 94, right hemisphere 231.5
2848 Male, age 76, right hemisphere 221.5
Subiculum
nTPM: 259.7
2042 Male, age 76, both hemispheres 291.1
2729 Female, age 91, right hemisphere 271.3
1977 Female, age 85, both hemispheres 267.3
2619 Male, age 74, both hemispheres 261.0
1901 Male, age 80, both hemispheres 249.9
2438 Female, age 94, left hemisphere 217.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 564.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 564.9
Samples: 255

Max nTPM: 1116.4
Min nTPM: 347.8
Std nTPM: 136.3
Median nTPM: 541.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1116.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1084.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1060.1
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 985.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 945.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 906.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 879.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 868.2
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 860.4
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 841.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 829.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.7
FF:10169-103B7 60 years, female 31.1
FF:10153-102I9 76 years, female 18.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 227.2
Pig sample Sample description nTPM
Subiculum
nTPM: 217.4
Samples: 4

Max nTPM: 297.2
Min nTPM: 178.4
Sample A Female 297.2
Sample B Female 203.9
Sample C Male 190.2
Sample D Male 178.4
Dorsal hippocampus
nTPM: 227.2
Samples: 4

Max nTPM: 289.6
Min nTPM: 163.4
Sample A Female 289.6
Sample B Female 201.3
Sample C Male 254.5
Sample D Male 163.4
Entorhinal cortex
nTPM: 207.6
Samples: 4

Max nTPM: 247.9
Min nTPM: 157.0
Sample A Female 199.4
Sample B Female 247.9
Sample C Male 226.0
Sample D Male 157.0
Ventral hippocampus
nTPM: 216.5
Samples: 4

Max nTPM: 287.7
Min nTPM: 181.1
Sample A Female 214.0
Sample B Female 183.0
Sample C Male 287.7
Sample D Male 181.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 296.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 294.5
Samples: 4

Max nTPM: 311.9
Min nTPM: 285.3
Sample A Male 291.4
Sample B Male 285.3
Sample C Female 311.9
Sample D Female 289.4
Hippocampal formation
nTPM: 296.6
Samples: 4

Max nTPM: 322.2
Min nTPM: 274.8
Sample A Male 322.2
Sample B Male 288.3
Sample C Female 274.8
Sample D Female 300.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.5
74819238 Antisense, RP_060315_02_C02, Mouse strain C57BL/6J (56 days, male) 19.6
68441520 Antisense, RP_041214_02_E05, Mouse strain C57BL/6J (56 days, male) 15.4

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