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  • EEF1G
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:734.1 nTPM
HPA Brain:453.1 nTPM
GTEx:734.1 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:375.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 356.9
1981 Female, age 72, midline 433.0
2565 Male, age 75, midline 369.9
2048 Male, age 55, midline 362.8
2194 Female, age 79, both hemispheres 317.8
2816 Male, age 47, midline 301.2
Cervical spinal cord, dorsal horn
nTPM: 361.0
2173 Female, age 72, unknown 477.7
2069 Male, age 47, both hemispheres 430.7
2296 Male, age 66, both hemispheres 378.7
1877 Male, age 55, unknown 368.5
2721 Male, age 90, both hemispheres 279.3
2297 Male, age 75, both hemispheres 230.9
Cervical spinal cord, ventral horn
nTPM: 453.1
2809 Male, age 90, both hemispheres 563.6
2098 Female, age 72, unknown 549.2
2480 Male, age 75, both hemispheres 526.3
2295 Male, age 66, both hemispheres 413.3
2068 Male, age 55, unknown 381.9
2820 Female, age 79, both hemispheres 284.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

734.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 734.1
Samples: 204

Max nTPM: 1453.7
Min nTPM: 391.1
Std nTPM: 175.3
Median nTPM: 712.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1453.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1342.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1284.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1111.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1102.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1095.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1090.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1087.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1085.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1067.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1048.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1046.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1037.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1031.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1018.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 999.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 996.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 969.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 968.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 960.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 948.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 948.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 948.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 939.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 937.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 935.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 934.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 933.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 931.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 926.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 923.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 910.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 909.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 905.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 898.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 890.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 885.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 882.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 870.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 868.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 867.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 863.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 855.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 851.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 849.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 843.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 839.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 838.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 838.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 838.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 832.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 829.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 828.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 822.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 817.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 813.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 812.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 812.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 811.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 811.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 811.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 810.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 808.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 804.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 804.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 791.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 791.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 791.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 790.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 787.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 786.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 785.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 782.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 781.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 780.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 777.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 776.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 775.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 773.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 771.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 763.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 763.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 761.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 760.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 756.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 756.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 748.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 746.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 739.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 739.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 738.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 737.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 736.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 734.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 733.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 723.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 721.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 720.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 717.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 716.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 715.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 713.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 712.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 708.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 705.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 703.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 703.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 697.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 695.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 695.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 692.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 691.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 685.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 684.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 683.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 680.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 677.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 674.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 672.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 671.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 668.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 668.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 667.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 667.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 664.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 662.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 662.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 662.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 659.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 658.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 656.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 656.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 656.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 655.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 654.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 654.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 652.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 652.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 650.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 648.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 637.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 637.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 634.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 629.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 624.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 624.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 617.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 614.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 608.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 608.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 606.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 605.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 604.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 601.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 599.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 598.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 597.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 596.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 596.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 596.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 585.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 583.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 583.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 583.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 576.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 573.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 572.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 567.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 566.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 559.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 556.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 555.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 553.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 551.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 550.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 549.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 548.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 548.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 544.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 543.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 543.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 541.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 541.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 535.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 532.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 531.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 530.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 529.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 516.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 500.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 500.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 500.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 495.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 489.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 486.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 486.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 482.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 464.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 462.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 462.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 454.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 437.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 415.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 391.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29.0
FF:10181-103D1 60 years, female 34.5
FF:10159-103A6 76 years, female 23.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 375.7
Samples: 4

Max nTPM: 531.7
Min nTPM: 300.7
Sample A Female 302.4
Sample B Female 368.1
Sample C Male 531.7
Sample D Male 300.7
Ventral spinal cord
nTPM: 372.7
Samples: 4

Max nTPM: 428.1
Min nTPM: 332.8
Sample A Female 332.8
Sample B Female 387.3
Sample C Male 428.1
Sample D Male 342.7

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