MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:182.8 nTPM
HPA Brain:39.9 nTPM
GTEx:182.8 nTPM
FANTOM5:50.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.4
2411 Female, age 72, unknown 46.3
2828 Female, age 72, unknown 44.9
1870 Female, age 42, unknown 42.4
2666 Male, age 74, left hemisphere 39.9
1827 Male, age 72, unknown 38.1
2019 Male, age 18, unknown 37.9
2586 Male, age 75, left hemisphere 36.1
1833 Male, age 53, unknown 35.8
1830 Male, age 51, unknown 27.3
2219 Male, age 76, both hemispheres 25.8
Dorsal raphe nucleus
nTPM: 37.9
2298 Female, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 41.8
2016 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 30.8
2047 Male, age 72, unknown 30.3
Inferior colliculus
nTPM: 32.1
1890 Male, age 53, unknown 38.7
2097 Female, age 72, unknown 34.1
2849 Male, age 72, unknown 29.0
1848 Female, age 42, unknown 26.5
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Periaquaductal grey, anterior
nTPM: 33.4
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 35.7
2502 Female, age 75, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 33.9
1831 Male, age 72, unknown 42.8
1840 Male, age 53, unknown 36.1
2464 Female, age 72, unknown 28.3
2850 Male, age 76, both hemispheres 28.3
Periaquaductal grey, lateral
nTPM: 34.2
2053 Male, age 18, unknown 43.9
2140 Male, age 76, both hemispheres 32.1
2272 Male, age 74, both hemispheres 26.7
Pretectal area
nTPM: 33.4
1815 Male, age 53, unknown 37.9
2007 Male, age 72, unknown 36.8
2316 Male, age 76, right hemisphere 36.1
2407 Male, age 75, both hemispheres 35.3
2224 Female, age 72, unknown 34.6
1944 Female, age 72, unknown 34.0
2825 Male, age 18, unknown 33.9
1816 Male, age 51, unknown 33.8
2667 Female, age 75, unknown 29.5
2273 Male, age 74, both hemispheres 28.1
1817 Female, age 42, unknown 27.8
Red nucleus
nTPM: 37.7
2503 Female, age 72, unknown 46.1
2588 Male, age 74, left hemisphere 45.5
2769 Male, age 72, unknown 45.5
2725 Female, age 75, unknown 43.6
1865 Male, age 51, unknown 39.8
2584 Male, age 75, left hemisphere 39.3
2227 Male, age 72, unknown 39.0
1821 Female, age 72, unknown 36.4
1904 Male, age 53, unknown 31.5
2823 Male, age 76, right hemisphere 30.3
1954 Female, age 42, unknown 28.2
2785 Male, age 18, unknown 27.3
Substantia nigra
nTPM: 38.1
2665 Male, age 74, both hemispheres 48.4
1851 Male, age 51, unknown 48.3
1916 Female, age 42, unknown 44.2
2590 Female, age 75, unknown 41.9
1889 Female, age 72, unknown 41.5
2699 Male, age 18, unknown 39.9
2583 Male, age 75, right hemisphere 39.0
1941 Male, age 53, unknown 31.4
2241 Male, age 72, unknown 25.4
2409 Female, age 72, unknown 21.1
Superior colliculus
nTPM: 37.5
2587 Male, age 74, left hemisphere 49.3
1913 Female, age 42, unknown 41.4
1796 Male, age 53, unknown 41.1
1995 Male, age 72, unknown 38.3
1895 Male, age 76, right hemisphere 37.6
2668 Female, age 75, unknown 37.2
1839 Male, age 51, unknown 35.3
2087 Female, age 72, unknown 35.3
2261 Male, age 18, unknown 30.8
2664 Male, age 75, both hemispheres 28.4
Ventral tegmental area
nTPM: 39.9
1915 Female, age 42, unknown 52.5
2021 Male, age 53, unknown 40.9
2223 Female, age 72, unknown 40.6
1942 Male, age 51, unknown 36.5
2410 Female, age 72, unknown 36.2
2218 Male, age 76, both hemispheres 32.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 182.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 182.8
Samples: 183

Max nTPM: 481.8
Min nTPM: 67.0
Std nTPM: 70.7
Median nTPM: 169.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 481.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 402.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 367.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 355.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 350.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 348.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 341.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 336.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 328.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 316.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 306.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

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