MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.0 nTPM
HPA Brain:136.4 nTPM
GTEx:86.0 nTPM
FANTOM5:178.8 Scaled Tags Per Million
Pig:293.3 nTPM
Mouse:564.0 nTPM
Allen mouse:28.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 136.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.9
2666 Male, age 74, left hemisphere 151.6
2586 Male, age 75, left hemisphere 139.4
2019 Male, age 18, unknown 126.5
2219 Male, age 76, both hemispheres 113.0
1827 Male, age 72, unknown 108.5
2411 Female, age 72, unknown 108.4
1833 Male, age 53, unknown 101.7
2828 Female, age 72, unknown 98.8
1830 Male, age 51, unknown 95.8
1870 Female, age 42, unknown 95.0
Dorsal raphe nucleus
nTPM: 101.7
1828 Male, age 53, unknown 126.1
2047 Male, age 72, unknown 109.6
2298 Female, age 72, unknown 93.2
2750 Male, age 76, both hemispheres 90.9
2016 Female, age 72, unknown 88.6
Inferior colliculus
nTPM: 100.1
1890 Male, age 53, unknown 106.3
2849 Male, age 72, unknown 102.2
2097 Female, age 72, unknown 98.7
1848 Female, age 42, unknown 93.1
Median raphe nucleus
nTPM: 104.6
2220 Male, age 76, midline 104.6
Periaquaductal grey, anterior
nTPM: 91.0
2502 Female, age 75, unknown 96.5
1947 Male, age 18, unknown 89.6
1795 Male, age 51, unknown 86.8
Periaquaductal grey, dorsal
nTPM: 87.8
1831 Male, age 72, unknown 94.2
1840 Male, age 53, unknown 90.5
2464 Female, age 72, unknown 84.8
2850 Male, age 76, both hemispheres 81.7
Periaquaductal grey, lateral
nTPM: 71.9
2053 Male, age 18, unknown 76.9
2140 Male, age 76, both hemispheres 72.7
2272 Male, age 74, both hemispheres 66.1
Pretectal area
nTPM: 102.6
2007 Male, age 72, unknown 136.7
1817 Female, age 42, unknown 134.3
1816 Male, age 51, unknown 128.9
1944 Female, age 72, unknown 118.5
1815 Male, age 53, unknown 116.7
2407 Male, age 75, both hemispheres 98.6
2825 Male, age 18, unknown 90.7
2667 Female, age 75, unknown 84.2
2224 Female, age 72, unknown 80.1
2316 Male, age 76, right hemisphere 73.2
2273 Male, age 74, both hemispheres 66.6
Red nucleus
nTPM: 117.0
2588 Male, age 74, left hemisphere 158.1
1821 Female, age 72, unknown 134.2
2725 Female, age 75, unknown 134.1
2503 Female, age 72, unknown 127.4
2584 Male, age 75, left hemisphere 123.3
2785 Male, age 18, unknown 116.5
1954 Female, age 42, unknown 104.5
2769 Male, age 72, unknown 103.7
2227 Male, age 72, unknown 102.9
1865 Male, age 51, unknown 102.6
1904 Male, age 53, unknown 102.0
2823 Male, age 76, right hemisphere 94.7
Substantia nigra
nTPM: 136.4
1916 Female, age 42, unknown 185.6
1851 Male, age 51, unknown 148.8
1941 Male, age 53, unknown 139.1
2241 Male, age 72, unknown 138.0
2665 Male, age 74, both hemispheres 136.9
2699 Male, age 18, unknown 131.5
1889 Female, age 72, unknown 127.4
2409 Female, age 72, unknown 125.2
2583 Male, age 75, right hemisphere 123.0
2590 Female, age 75, unknown 108.5
Superior colliculus
nTPM: 97.7
2668 Female, age 75, unknown 115.9
2664 Male, age 75, both hemispheres 115.3
2587 Male, age 74, left hemisphere 111.1
2087 Female, age 72, unknown 105.7
1839 Male, age 51, unknown 97.9
1895 Male, age 76, right hemisphere 94.2
1796 Male, age 53, unknown 91.9
2261 Male, age 18, unknown 91.5
1913 Female, age 42, unknown 78.3
1995 Male, age 72, unknown 75.0
Ventral tegmental area
nTPM: 111.2
1915 Female, age 42, unknown 132.1
2410 Female, age 72, unknown 125.2
2218 Male, age 76, both hemispheres 118.1
1942 Male, age 51, unknown 105.8
2223 Female, age 72, unknown 98.2
2021 Male, age 53, unknown 87.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.0
Samples: 183

Max nTPM: 176.5
Min nTPM: 41.9
Std nTPM: 24.6
Median nTPM: 83.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 176.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 165.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 147.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 145.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 136.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 131.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 131.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 128.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 128.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 125.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 178.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.8
FF:10158-103A5 76 years, female 178.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 293.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 277.6
Samples: 4

Max nTPM: 379.0
Min nTPM: 194.6
Sample A Female 379.0
Sample B Female 211.9
Sample C Male 324.8
Sample D Male 194.6
Midbrain
nTPM: 290.3
Samples: 4

Max nTPM: 320.5
Min nTPM: 265.6
Sample A Female 265.6
Sample B Female 285.2
Sample C Male 320.5
Sample D Male 289.9
Periaqueductal gray
nTPM: 232.8
Samples: 3

Max nTPM: 260.7
Min nTPM: 193.2
Sample B Female 244.4
Sample C Male 260.7
Sample D Male 193.2
Superior colliculi
nTPM: 293.3
Samples: 4

Max nTPM: 368.1
Min nTPM: 169.9
Sample A Female 368.1
Sample B Female 169.9
Sample C Male 337.7
Sample D Male 297.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 564.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 564.0
Samples: 4

Max nTPM: 567.4
Min nTPM: 558.4
Sample A Male 565.8
Sample B Male 567.4
Sample C Female 564.3
Sample D Female 558.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 28.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 28.3
564758 Antisense, RP_040826_01_D03, Mouse strain C57BL/6J (56 days, male) 28.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo