A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
11.3
nTPM
Schmiedel:
58.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
NK-cell nTPM: 1.6
Samples: 6
Max nTPM: 3.4
Min nTPM: 0.6
P10809_1013
1.8
P10809_1033
1.4
P10809_1052
1.0
P10809_1071
3.4
P10809_1093
0.6
P10809_1103
1.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
Monaco sample
nTPM
NK-cell nTPM: 11.3
Samples: 4
Max nTPM: 12.4
Min nTPM: 9.5
RHH5316_R3683
11.6
RHH5224_R3596
11.5
RHH5253_R3625
12.4
RHH5282_R3654
9.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.7
Schmiedel sample id
TPM
NK-cell TPM: 58.7
Samples: 90
Max TPM: 91.3
Min TPM: 41.5
NK_1
91.3
NK_2
78.8
NK_3
78.3
NK_4
76.3
NK_5
74.8
NK_6
73.6
NK_7
72.4
NK_8
71.4
NK_9
71.0
NK_10
71.0
NK_11
71.0
NK_12
70.5
NK_13
69.0
NK_14
68.9
NK_15
68.8
NK_16
68.8
NK_17
68.5
NK_18
68.2
NK_19
68.0
NK_20
67.8
NK_21
67.1
NK_22
66.7
NK_23
66.7
NK_24
66.3
NK_25
65.5
NK_26
65.5
NK_27
64.1
NK_28
63.8
NK_29
63.1
NK_30
62.1
NK_31
61.8
NK_32
61.3
NK_33
60.9
NK_34
60.7
NK_35
60.2
NK_36
60.2
NK_37
60.1
NK_38
59.6
NK_39
58.3
NK_40
58.1
NK_41
57.8
NK_42
57.2
NK_43
57.1
NK_44
56.7
NK_45
56.5
NK_46
56.5
NK_47
56.4
NK_48
55.9
NK_49
55.4
NK_50
54.7
NK_51
54.1
NK_52
53.8
NK_53
53.6
NK_54
53.5
NK_55
53.4
NK_56
53.3
NK_57
53.2
NK_58
53.0
NK_59
52.8
NK_60
52.8
NK_61
52.8
NK_62
52.6
NK_63
52.6
NK_64
52.5
NK_65
52.3
NK_66
51.9
NK_67
51.4
NK_68
51.3
NK_69
51.2
NK_70
51.0
NK_71
51.0
NK_72
51.0
NK_73
50.7
NK_74
50.5
NK_75
50.0
NK_76
49.8
NK_77
49.6
NK_78
49.5
NK_79
49.4
NK_80
48.8
NK_81
48.8
NK_82
48.6
NK_83
47.2
NK_84
47.2
NK_85
46.9
NK_86
46.9
NK_87
46.5
NK_88
44.0
NK_89
44.0
NK_90
41.5
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