A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
6.7
nTPM
Schmiedel:
20.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Classical monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
0.7
P10809_1039
1.7
P10809_1058
0.9
P10809_1080
0.8
P10809_1107
1.0
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.1
P10809_1004
0.7
P10809_1023
0.8
P10809_1042
1.3
P10809_1061
0.1
P10809_1081
0.6
P10809_1108
0.9
Non-classical monocyte nTPM: 0.7
Samples: 5
Max nTPM: 1.1
Min nTPM: 0.2
P10809_1005
0.7
P10809_1053
0.9
P10809_1072
0.2
P10809_1082
1.1
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
Monaco sample
nTPM
Classical monocyte nTPM: 6.7
Samples: 4
Max nTPM: 10.4
Min nTPM: 4.4
RHH5313_R3680
4.4
RHH5221_R3593
10.4
RHH5250_R3622
5.3
RHH5279_R3651
6.8
Intermediate monocyte nTPM: 5.7
Samples: 4
Max nTPM: 7.0
Min nTPM: 4.8
RHH5314_R3681
4.8
RHH5222_R3594
7.0
RHH5251_R3623
5.3
RHH5280_R3652
5.5
Non-classical monocyte nTPM: 4.5
Samples: 4
Max nTPM: 5.7
Min nTPM: 3.9
RHH5315_R3682
4.2
RHH5223_R3595
3.9
RHH5252_R3624
5.7
RHH5281_R3653
4.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
Schmiedel sample id
TPM
Classical monocyte TPM: 20.1
Samples: 91
Max TPM: 26.4
Min TPM: 15.2
MONOCYTES_1
26.4
MONOCYTES_2
24.6
MONOCYTES_3
24.0
MONOCYTES_4
23.9
MONOCYTES_5
23.8
MONOCYTES_6
23.7
MONOCYTES_7
23.4
MONOCYTES_8
23.4
MONOCYTES_9
23.0
MONOCYTES_10
23.0
MONOCYTES_11
22.9
MONOCYTES_12
22.8
MONOCYTES_13
22.5
MONOCYTES_14
22.3
MONOCYTES_15
22.3
MONOCYTES_16
22.3
MONOCYTES_17
22.1
MONOCYTES_18
22.0
MONOCYTES_19
21.9
MONOCYTES_20
21.8
MONOCYTES_21
21.8
MONOCYTES_22
21.7
MONOCYTES_23
21.6
MONOCYTES_24
21.6
MONOCYTES_25
21.6
MONOCYTES_26
21.4
MONOCYTES_27
21.3
MONOCYTES_28
21.3
MONOCYTES_29
21.3
MONOCYTES_30
21.2
MONOCYTES_31
21.1
MONOCYTES_32
21.0
MONOCYTES_33
20.9
MONOCYTES_34
20.9
MONOCYTES_35
20.8
MONOCYTES_36
20.7
MONOCYTES_37
20.5
MONOCYTES_38
20.5
MONOCYTES_39
20.5
MONOCYTES_40
20.4
MONOCYTES_41
20.4
MONOCYTES_42
20.1
MONOCYTES_43
20.1
MONOCYTES_44
20.1
MONOCYTES_45
20.1
MONOCYTES_46
20.0
MONOCYTES_47
19.9
MONOCYTES_48
19.9
MONOCYTES_49
19.6
MONOCYTES_50
19.6
MONOCYTES_51
19.5
MONOCYTES_52
19.4
MONOCYTES_53
19.4
MONOCYTES_54
19.3
MONOCYTES_55
19.3
MONOCYTES_56
19.1
MONOCYTES_57
19.1
MONOCYTES_58
19.0
MONOCYTES_59
19.0
MONOCYTES_60
19.0
MONOCYTES_61
18.9
MONOCYTES_62
18.9
MONOCYTES_63
18.8
MONOCYTES_64
18.6
MONOCYTES_65
18.6
MONOCYTES_66
18.5
MONOCYTES_67
18.5
MONOCYTES_68
18.4
MONOCYTES_69
18.4
MONOCYTES_70
18.4
MONOCYTES_71
18.4
MONOCYTES_72
18.3
MONOCYTES_73
18.3
MONOCYTES_74
18.2
MONOCYTES_75
18.2
MONOCYTES_76
17.9
MONOCYTES_77
17.9
MONOCYTES_78
17.7
MONOCYTES_79
17.7
MONOCYTES_80
17.6
MONOCYTES_81
17.3
MONOCYTES_82
17.2
MONOCYTES_83
17.2
MONOCYTES_84
17.0
MONOCYTES_85
16.9
MONOCYTES_86
16.9
MONOCYTES_87
16.7
MONOCYTES_88
16.4
MONOCYTES_89
16.3
MONOCYTES_90
15.7
MONOCYTES_91
15.2
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Non-classical monocyte TPM: 17.4
Samples: 90
Max TPM: 22.7
Min TPM: 12.8
M2_1
22.7
M2_2
22.4
M2_3
22.3
M2_4
21.1
M2_5
21.0
M2_6
21.0
M2_7
20.8
M2_8
20.8
M2_9
20.4
M2_10
20.3
M2_11
20.3
M2_12
19.9
M2_13
19.9
M2_14
19.8
M2_15
19.8
M2_16
19.6
M2_17
19.1
M2_18
19.0
M2_19
18.9
M2_20
18.9
M2_21
18.9
M2_22
18.9
M2_23
18.8
M2_24
18.8
M2_25
18.7
M2_26
18.7
M2_27
18.5
M2_28
18.5
M2_29
18.5
M2_30
18.5
M2_31
18.4
M2_32
18.3
M2_33
18.1
M2_34
18.1
M2_35
17.8
M2_36
17.8
M2_37
17.7
M2_38
17.6
M2_39
17.6
M2_40
17.5
M2_41
17.5
M2_42
17.4
M2_43
17.4
M2_44
17.4
M2_45
17.3
M2_46
17.3
M2_47
17.2
M2_48
17.1
M2_49
17.0
M2_50
16.9
M2_51
16.7
M2_52
16.7
M2_53
16.7
M2_54
16.6
M2_55
16.5
M2_56
16.4
M2_57
16.4
M2_58
16.4
M2_59
16.2
M2_60
16.1
M2_61
16.1
M2_62
16.0
M2_63
16.0
M2_64
16.0
M2_65
15.9
M2_66
15.9
M2_67
15.8
M2_68
15.8
M2_69
15.7
M2_70
15.6
M2_71
15.6
M2_72
15.5
M2_73
15.5
M2_74
15.4
M2_75
15.4
M2_76
15.3
M2_77
15.3
M2_78
15.3
M2_79
15.3
M2_80
15.0
M2_81
14.8
M2_82
14.7
M2_83
14.5
M2_84
14.5
M2_85
14.3
M2_86
14.3
M2_87
14.2
M2_88
14.1
M2_89
14.0
M2_90
12.8
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