MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA Brain:84.4 nTPM
GTEx:18.5 nTPM
Pig:37.5 nTPM
Mouse:23.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.6
2219 Male, age 76, both hemispheres 108.7
2019 Male, age 18, unknown 80.1
1830 Male, age 51, unknown 77.7
1833 Male, age 53, unknown 76.8
2411 Female, age 72, unknown 74.6
2666 Male, age 74, left hemisphere 74.6
2828 Female, age 72, unknown 73.0
1827 Male, age 72, unknown 67.8
1870 Female, age 42, unknown 65.0
2586 Male, age 75, left hemisphere 57.9
Dorsal raphe nucleus
nTPM: 70.3
2016 Female, age 72, unknown 75.1
2750 Male, age 76, both hemispheres 74.8
2298 Female, age 72, unknown 67.5
1828 Male, age 53, unknown 67.4
2047 Male, age 72, unknown 66.8
Inferior colliculus
nTPM: 68.2
2849 Male, age 72, unknown 72.6
1890 Male, age 53, unknown 68.3
2097 Female, age 72, unknown 66.0
1848 Female, age 42, unknown 65.8
Median raphe nucleus
nTPM: 76.4
2220 Male, age 76, midline 76.4
Periaquaductal grey, anterior
nTPM: 69.1
1947 Male, age 18, unknown 72.9
1795 Male, age 51, unknown 67.8
2502 Female, age 75, unknown 66.5
Periaquaductal grey, dorsal
nTPM: 69.1
1831 Male, age 72, unknown 73.7
2850 Male, age 76, both hemispheres 72.8
2464 Female, age 72, unknown 68.4
1840 Male, age 53, unknown 61.2
Periaquaductal grey, lateral
nTPM: 82.9
2272 Male, age 74, both hemispheres 93.1
2140 Male, age 76, both hemispheres 79.9
2053 Male, age 18, unknown 75.8
Pretectal area
nTPM: 72.8
2407 Male, age 75, both hemispheres 99.9
2316 Male, age 76, right hemisphere 96.1
2273 Male, age 74, both hemispheres 84.2
2224 Female, age 72, unknown 70.8
1815 Male, age 53, unknown 67.8
2007 Male, age 72, unknown 66.8
1816 Male, age 51, unknown 66.2
1944 Female, age 72, unknown 65.0
2825 Male, age 18, unknown 64.7
1817 Female, age 42, unknown 62.1
2667 Female, age 75, unknown 57.5
Red nucleus
nTPM: 67.6
2785 Male, age 18, unknown 75.4
1865 Male, age 51, unknown 74.4
1904 Male, age 53, unknown 73.1
2227 Male, age 72, unknown 71.9
2769 Male, age 72, unknown 71.5
2503 Female, age 72, unknown 70.1
2584 Male, age 75, left hemisphere 69.7
2725 Female, age 75, unknown 68.6
1954 Female, age 42, unknown 63.8
2823 Male, age 76, right hemisphere 61.1
1821 Female, age 72, unknown 56.0
2588 Male, age 74, left hemisphere 55.1
Substantia nigra
nTPM: 84.4
2665 Male, age 74, both hemispheres 114.6
2590 Female, age 75, unknown 101.6
1941 Male, age 53, unknown 101.0
2583 Male, age 75, right hemisphere 91.9
2699 Male, age 18, unknown 81.5
2241 Male, age 72, unknown 75.2
1851 Male, age 51, unknown 75.1
1916 Female, age 42, unknown 71.8
2409 Female, age 72, unknown 70.9
1889 Female, age 72, unknown 60.8
Superior colliculus
nTPM: 72.8
1913 Female, age 42, unknown 80.9
1995 Male, age 72, unknown 76.7
2664 Male, age 75, both hemispheres 76.1
2668 Female, age 75, unknown 75.1
2087 Female, age 72, unknown 74.7
1839 Male, age 51, unknown 73.1
2587 Male, age 74, left hemisphere 72.8
2261 Male, age 18, unknown 70.2
1796 Male, age 53, unknown 64.3
1895 Male, age 76, right hemisphere 63.6
Ventral tegmental area
nTPM: 76.4
2218 Male, age 76, both hemispheres 80.9
1942 Male, age 51, unknown 80.0
2021 Male, age 53, unknown 78.1
2223 Female, age 72, unknown 75.9
2410 Female, age 72, unknown 73.4
1915 Female, age 42, unknown 69.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.5
Samples: 183

Max nTPM: 53.0
Min nTPM: 5.9
Std nTPM: 7.4
Median nTPM: 16.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 53.0
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 40.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 40.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 39.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 36.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 35.8
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 32.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 31.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 31.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 31.5
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.9
Samples: 4

Max nTPM: 38.6
Min nTPM: 32.2
Sample A Female 32.2
Sample B Female 33.8
Sample C Male 38.6
Sample D Male 35.1
Midbrain
nTPM: 35.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 29.6
Sample A Female 30.0
Sample B Female 29.6
Sample C Male 46.1
Sample D Male 36.0
Periaqueductal gray
nTPM: 27.6
Samples: 3

Max nTPM: 30.7
Min nTPM: 25.6
Sample B Female 26.4
Sample C Male 30.7
Sample D Male 25.6
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 47.0
Min nTPM: 30.6
Sample A Female 31.5
Sample B Female 30.6
Sample C Male 41.0
Sample D Male 47.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 22.9
Sample C Female 25.0
Sample D Female 23.6

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