A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
24.3
nTPM
Schmiedel:
72.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
NK-cell nTPM: 5.8
Samples: 6
Max nTPM: 12.6
Min nTPM: 0.6
P10809_1013
2.6
P10809_1033
6.1
P10809_1052
2.3
P10809_1071
10.7
P10809_1093
0.6
P10809_1103
12.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.3
Monaco sample
nTPM
NK-cell nTPM: 24.3
Samples: 4
Max nTPM: 29.2
Min nTPM: 15.9
RHH5316_R3683
15.9
RHH5224_R3596
26.3
RHH5253_R3625
25.7
RHH5282_R3654
29.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.4
Schmiedel sample id
TPM
NK-cell TPM: 72.4
Samples: 90
Max TPM: 93.7
Min TPM: 52.8
NK_1
93.7
NK_2
93.5
NK_3
90.7
NK_4
88.0
NK_5
87.9
NK_6
87.1
NK_7
86.9
NK_8
85.8
NK_9
84.9
NK_10
83.2
NK_11
83.0
NK_12
82.9
NK_13
82.8
NK_14
81.7
NK_15
81.1
NK_16
80.8
NK_17
79.8
NK_18
79.8
NK_19
79.6
NK_20
79.3
NK_21
78.6
NK_22
78.5
NK_23
77.9
NK_24
77.7
NK_25
77.4
NK_26
77.1
NK_27
77.1
NK_28
77.0
NK_29
76.5
NK_30
75.9
NK_31
75.4
NK_32
75.2
NK_33
75.2
NK_34
74.8
NK_35
74.3
NK_36
73.9
NK_37
73.8
NK_38
73.6
NK_39
73.5
NK_40
73.2
NK_41
73.1
NK_42
73.1
NK_43
72.2
NK_44
71.8
NK_45
71.5
NK_46
71.3
NK_47
71.2
NK_48
71.1
NK_49
70.5
NK_50
70.3
NK_51
70.3
NK_52
70.1
NK_53
70.1
NK_54
69.7
NK_55
69.3
NK_56
68.5
NK_57
68.3
NK_58
67.9
NK_59
67.9
NK_60
67.7
NK_61
67.5
NK_62
67.4
NK_63
67.3
NK_64
67.2
NK_65
67.1
NK_66
67.0
NK_67
66.7
NK_68
66.3
NK_69
66.1
NK_70
65.8
NK_71
65.8
NK_72
65.3
NK_73
65.2
NK_74
64.5
NK_75
64.3
NK_76
63.8
NK_77
63.5
NK_78
63.1
NK_79
63.0
NK_80
62.8
NK_81
62.4
NK_82
62.2
NK_83
61.8
NK_84
61.3
NK_85
61.0
NK_86
60.9
NK_87
59.7
NK_88
56.7
NK_89
54.6
NK_90
52.8
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