A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.1
nTPM
Monaco:
27.1
nTPM
Schmiedel:
125.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.1
HPA sample
nTPM
Classical monocyte nTPM: 4.0
Samples: 6
Max nTPM: 6.1
Min nTPM: 1.9
P10809_1003
4.5
P10809_1020
6.1
P10809_1039
4.5
P10809_1058
1.9
P10809_1080
2.6
P10809_1107
4.3
Intermediate monocyte nTPM: 3.8
Samples: 6
Max nTPM: 6.2
Min nTPM: 1.0
P10809_1004
1.0
P10809_1023
2.9
P10809_1042
5.3
P10809_1061
3.2
P10809_1081
4.0
P10809_1108
6.2
Non-classical monocyte nTPM: 8.0
Samples: 5
Max nTPM: 20.8
Min nTPM: 3.2
P10809_1005
5.5
P10809_1053
5.8
P10809_1072
20.8
P10809_1082
3.2
P10809_1109
4.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.1
Monaco sample
nTPM
Classical monocyte nTPM: 24.3
Samples: 4
Max nTPM: 32.9
Min nTPM: 13.2
RHH5313_R3680
13.2
RHH5221_R3593
28.7
RHH5250_R3622
32.9
RHH5279_R3651
22.2
Intermediate monocyte nTPM: 23.8
Samples: 4
Max nTPM: 35.2
Min nTPM: 18.2
RHH5314_R3681
18.2
RHH5222_R3594
35.2
RHH5251_R3623
20.8
RHH5280_R3652
20.8
Non-classical monocyte nTPM: 27.1
Samples: 4
Max nTPM: 41.8
Min nTPM: 19.0
RHH5315_R3682
23.7
RHH5223_R3595
41.8
RHH5252_R3624
23.8
RHH5281_R3653
19.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.2
Schmiedel sample id
TPM
Classical monocyte TPM: 125.2
Samples: 91
Max TPM: 156.2
Min TPM: 93.9
MONOCYTES_1
156.2
MONOCYTES_2
154.6
MONOCYTES_3
153.9
MONOCYTES_4
150.9
MONOCYTES_5
150.7
MONOCYTES_6
150.0
MONOCYTES_7
148.8
MONOCYTES_8
146.7
MONOCYTES_9
146.4
MONOCYTES_10
145.0
MONOCYTES_11
144.8
MONOCYTES_12
143.4
MONOCYTES_13
142.2
MONOCYTES_14
142.1
MONOCYTES_15
141.8
MONOCYTES_16
141.8
MONOCYTES_17
140.8
MONOCYTES_18
139.3
MONOCYTES_19
139.1
MONOCYTES_20
138.3
MONOCYTES_21
138.2
MONOCYTES_22
137.6
MONOCYTES_23
137.5
MONOCYTES_24
137.3
MONOCYTES_25
137.1
MONOCYTES_26
137.0
MONOCYTES_27
136.9
MONOCYTES_28
136.6
MONOCYTES_29
136.5
MONOCYTES_30
136.1
MONOCYTES_31
134.2
MONOCYTES_32
133.7
MONOCYTES_33
132.5
MONOCYTES_34
131.4
MONOCYTES_35
130.7
MONOCYTES_36
129.7
MONOCYTES_37
128.5
MONOCYTES_38
128.4
MONOCYTES_39
127.7
MONOCYTES_40
126.4
MONOCYTES_41
126.3
MONOCYTES_42
125.6
MONOCYTES_43
125.4
MONOCYTES_44
124.9
MONOCYTES_45
124.3
MONOCYTES_46
123.6
MONOCYTES_47
123.0
MONOCYTES_48
122.8
MONOCYTES_49
122.3
MONOCYTES_50
122.0
MONOCYTES_51
121.3
MONOCYTES_52
120.7
MONOCYTES_53
120.2
MONOCYTES_54
120.2
MONOCYTES_55
120.1
MONOCYTES_56
120.0
MONOCYTES_57
119.7
MONOCYTES_58
119.1
MONOCYTES_59
118.0
MONOCYTES_60
117.9
MONOCYTES_61
117.9
MONOCYTES_62
116.7
MONOCYTES_63
115.9
MONOCYTES_64
115.7
MONOCYTES_65
115.1
MONOCYTES_66
114.9
MONOCYTES_67
114.7
MONOCYTES_68
114.6
MONOCYTES_69
114.2
MONOCYTES_70
111.6
MONOCYTES_71
111.5
MONOCYTES_72
111.4
MONOCYTES_73
110.2
MONOCYTES_74
109.6
MONOCYTES_75
109.4
MONOCYTES_76
108.0
MONOCYTES_77
107.2
MONOCYTES_78
107.1
MONOCYTES_79
107.0
MONOCYTES_80
106.9
MONOCYTES_81
106.8
MONOCYTES_82
106.6
MONOCYTES_83
106.2
MONOCYTES_84
105.3
MONOCYTES_85
104.5
MONOCYTES_86
103.9
MONOCYTES_87
103.2
MONOCYTES_88
101.8
MONOCYTES_89
99.5
MONOCYTES_90
94.5
MONOCYTES_91
93.9
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Non-classical monocyte TPM: 57.1
Samples: 90
Max TPM: 74.4
Min TPM: 42.9
M2_1
74.4
M2_2
73.0
M2_3
71.6
M2_4
71.5
M2_5
70.7
M2_6
70.7
M2_7
70.6
M2_8
67.3
M2_9
67.0
M2_10
66.6
M2_11
65.5
M2_12
65.5
M2_13
65.5
M2_14
64.8
M2_15
64.3
M2_16
63.8
M2_17
63.7
M2_18
63.6
M2_19
62.8
M2_20
62.0
M2_21
61.5
M2_22
61.1
M2_23
60.6
M2_24
60.5
M2_25
60.2
M2_26
60.1
M2_27
60.1
M2_28
60.1
M2_29
60.1
M2_30
59.7
M2_31
59.6
M2_32
59.5
M2_33
59.2
M2_34
59.1
M2_35
58.9
M2_36
58.2
M2_37
58.1
M2_38
57.8
M2_39
57.8
M2_40
57.7
M2_41
57.5
M2_42
57.2
M2_43
56.9
M2_44
56.9
M2_45
56.4
M2_46
55.9
M2_47
55.8
M2_48
55.6
M2_49
55.5
M2_50
55.5
M2_51
55.4
M2_52
55.4
M2_53
55.4
M2_54
55.3
M2_55
55.2
M2_56
54.8
M2_57
54.7
M2_58
54.5
M2_59
54.3
M2_60
54.2
M2_61
54.0
M2_62
54.0
M2_63
53.1
M2_64
52.8
M2_65
52.8
M2_66
52.7
M2_67
52.3
M2_68
52.1
M2_69
51.9
M2_70
50.6
M2_71
50.5
M2_72
50.3
M2_73
50.2
M2_74
50.0
M2_75
49.9
M2_76
49.8
M2_77
49.7
M2_78
49.6
M2_79
49.2
M2_80
49.2
M2_81
49.0
M2_82
48.8
M2_83
48.2
M2_84
48.0
M2_85
47.6
M2_86
47.3
M2_87
46.3
M2_88
43.4
M2_89
43.1
M2_90
42.9
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