A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.6
nTPM
Monaco:
11.0
nTPM
Schmiedel:
22.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.6
HPA sample
nTPM
NK-cell nTPM: 4.6
Samples: 6
Max nTPM: 12.3
Min nTPM: 0.4
P10809_1013
2.1
P10809_1033
3.1
P10809_1052
5.9
P10809_1071
12.3
P10809_1093
0.4
P10809_1103
3.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
Monaco sample
nTPM
NK-cell nTPM: 11.0
Samples: 4
Max nTPM: 16.4
Min nTPM: 4.6
RHH5316_R3683
16.4
RHH5224_R3596
4.6
RHH5253_R3625
14.3
RHH5282_R3654
8.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
Schmiedel sample id
TPM
NK-cell TPM: 22.7
Samples: 90
Max TPM: 36.4
Min TPM: 10.8
NK_1
36.4
NK_2
35.6
NK_3
35.3
NK_4
35.3
NK_5
34.3
NK_6
33.4
NK_7
33.3
NK_8
32.7
NK_9
32.6
NK_10
32.1
NK_11
31.8
NK_12
31.4
NK_13
31.2
NK_14
30.4
NK_15
30.2
NK_16
29.3
NK_17
29.3
NK_18
28.3
NK_19
28.0
NK_20
28.0
NK_21
27.8
NK_22
27.5
NK_23
27.2
NK_24
26.9
NK_25
26.1
NK_26
25.9
NK_27
25.7
NK_28
25.6
NK_29
25.4
NK_30
25.4
NK_31
24.9
NK_32
24.8
NK_33
24.7
NK_34
24.6
NK_35
24.5
NK_36
24.4
NK_37
24.4
NK_38
24.3
NK_39
24.3
NK_40
24.0
NK_41
23.9
NK_42
23.7
NK_43
23.3
NK_44
23.0
NK_45
22.8
NK_46
22.7
NK_47
22.2
NK_48
22.1
NK_49
22.0
NK_50
21.5
NK_51
21.3
NK_52
21.2
NK_53
20.3
NK_54
20.0
NK_55
19.6
NK_56
19.4
NK_57
19.1
NK_58
18.9
NK_59
18.8
NK_60
18.8
NK_61
18.7
NK_62
18.7
NK_63
18.5
NK_64
18.4
NK_65
18.4
NK_66
18.2
NK_67
17.9
NK_68
17.8
NK_69
17.4
NK_70
17.1
NK_71
17.1
NK_72
17.0
NK_73
17.0
NK_74
16.4
NK_75
15.9
NK_76
15.8
NK_77
15.7
NK_78
15.3
NK_79
14.9
NK_80
14.9
NK_81
14.9
NK_82
14.5
NK_83
14.3
NK_84
13.4
NK_85
13.3
NK_86
13.3
NK_87
12.8
NK_88
11.6
NK_89
11.3
NK_90
10.8
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