A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
13.5
nTPM
Schmiedel:
14.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.5
Min nTPM: 1.5
P10809_1003
1.5
P10809_1020
2.0
P10809_1039
3.5
P10809_1058
1.7
P10809_1080
2.2
P10809_1107
2.6
Intermediate monocyte nTPM: 3.1
Samples: 6
Max nTPM: 5.8
Min nTPM: 0.5
P10809_1004
3.9
P10809_1023
0.5
P10809_1042
3.9
P10809_1061
2.0
P10809_1081
2.4
P10809_1108
5.8
Non-classical monocyte nTPM: 2.2
Samples: 5
Max nTPM: 4.3
Min nTPM: 0.3
P10809_1005
2.0
P10809_1053
1.5
P10809_1072
0.3
P10809_1082
2.9
P10809_1109
4.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Monaco sample
nTPM
Classical monocyte nTPM: 9.9
Samples: 4
Max nTPM: 11.1
Min nTPM: 8.4
RHH5313_R3680
10.1
RHH5221_R3593
10.1
RHH5250_R3622
8.4
RHH5279_R3651
11.1
Intermediate monocyte nTPM: 13.5
Samples: 4
Max nTPM: 22.2
Min nTPM: 6.0
RHH5314_R3681
8.6
RHH5222_R3594
6.0
RHH5251_R3623
22.2
RHH5280_R3652
17.3
Non-classical monocyte nTPM: 12.0
Samples: 4
Max nTPM: 20.3
Min nTPM: 0.7
RHH5315_R3682
20.3
RHH5223_R3595
0.7
RHH5252_R3624
15.5
RHH5281_R3653
11.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.9
Schmiedel sample id
TPM
Classical monocyte TPM: 10.8
Samples: 91
Max TPM: 15.6
Min TPM: 5.5
MONOCYTES_1
15.6
MONOCYTES_2
15.6
MONOCYTES_3
15.6
MONOCYTES_4
14.9
MONOCYTES_5
14.9
MONOCYTES_6
14.4
MONOCYTES_7
14.1
MONOCYTES_8
14.1
MONOCYTES_9
13.6
MONOCYTES_10
13.6
MONOCYTES_11
13.6
MONOCYTES_12
13.5
MONOCYTES_13
13.3
MONOCYTES_14
13.1
MONOCYTES_15
13.0
MONOCYTES_16
13.0
MONOCYTES_17
12.9
MONOCYTES_18
12.9
MONOCYTES_19
12.7
MONOCYTES_20
12.7
MONOCYTES_21
12.7
MONOCYTES_22
12.6
MONOCYTES_23
12.5
MONOCYTES_24
12.4
MONOCYTES_25
12.2
MONOCYTES_26
12.2
MONOCYTES_27
11.9
MONOCYTES_28
11.8
MONOCYTES_29
11.8
MONOCYTES_30
11.8
MONOCYTES_31
11.7
MONOCYTES_32
11.6
MONOCYTES_33
11.6
MONOCYTES_34
11.6
MONOCYTES_35
11.5
MONOCYTES_36
11.5
MONOCYTES_37
11.5
MONOCYTES_38
11.3
MONOCYTES_39
11.3
MONOCYTES_40
11.3
MONOCYTES_41
11.2
MONOCYTES_42
11.1
MONOCYTES_43
11.1
MONOCYTES_44
11.0
MONOCYTES_45
10.9
MONOCYTES_46
10.9
MONOCYTES_47
10.9
MONOCYTES_48
10.8
MONOCYTES_49
10.7
MONOCYTES_50
10.7
MONOCYTES_51
10.7
MONOCYTES_52
10.7
MONOCYTES_53
10.6
MONOCYTES_54
10.5
MONOCYTES_55
10.4
MONOCYTES_56
10.4
MONOCYTES_57
10.3
MONOCYTES_58
10.2
MONOCYTES_59
10.1
MONOCYTES_60
10.0
MONOCYTES_61
10.0
MONOCYTES_62
9.8
MONOCYTES_63
9.8
MONOCYTES_64
9.7
MONOCYTES_65
9.7
MONOCYTES_66
9.6
MONOCYTES_67
9.4
MONOCYTES_68
9.1
MONOCYTES_69
9.0
MONOCYTES_70
9.0
MONOCYTES_71
8.9
MONOCYTES_72
8.9
MONOCYTES_73
8.7
MONOCYTES_74
8.7
MONOCYTES_75
8.5
MONOCYTES_76
8.5
MONOCYTES_77
8.4
MONOCYTES_78
8.3
MONOCYTES_79
8.3
MONOCYTES_80
8.2
MONOCYTES_81
8.0
MONOCYTES_82
8.0
MONOCYTES_83
7.9
MONOCYTES_84
7.5
MONOCYTES_85
7.5
MONOCYTES_86
7.3
MONOCYTES_87
7.2
MONOCYTES_88
7.1
MONOCYTES_89
6.8
MONOCYTES_90
6.4
MONOCYTES_91
5.5
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Non-classical monocyte TPM: 14.9
Samples: 90
Max TPM: 23.5
Min TPM: 6.1
M2_1
23.5
M2_2
23.0
M2_3
22.0
M2_4
21.8
M2_5
21.4
M2_6
20.6
M2_7
20.3
M2_8
19.2
M2_9
18.6
M2_10
18.4
M2_11
18.3
M2_12
18.2
M2_13
17.6
M2_14
17.5
M2_15
17.4
M2_16
17.3
M2_17
17.3
M2_18
17.1
M2_19
17.1
M2_20
16.9
M2_21
16.9
M2_22
16.9
M2_23
16.9
M2_24
16.8
M2_25
16.8
M2_26
16.8
M2_27
16.8
M2_28
16.7
M2_29
16.6
M2_30
16.6
M2_31
16.5
M2_32
16.3
M2_33
16.3
M2_34
16.2
M2_35
16.2
M2_36
16.1
M2_37
16.1
M2_38
16.1
M2_39
16.0
M2_40
16.0
M2_41
15.9
M2_42
15.7
M2_43
15.7
M2_44
15.5
M2_45
15.5
M2_46
15.4
M2_47
15.3
M2_48
14.9
M2_49
14.9
M2_50
14.8
M2_51
14.8
M2_52
14.7
M2_53
14.4
M2_54
14.4
M2_55
14.3
M2_56
14.1
M2_57
14.1
M2_58
13.6
M2_59
13.5
M2_60
13.4
M2_61
13.3
M2_62
13.2
M2_63
13.2
M2_64
13.1
M2_65
13.1
M2_66
13.0
M2_67
12.7
M2_68
12.7
M2_69
12.0
M2_70
11.9
M2_71
11.9
M2_72
11.8
M2_73
11.8
M2_74
11.6
M2_75
11.3
M2_76
11.2
M2_77
11.2
M2_78
11.1
M2_79
10.6
M2_80
10.6
M2_81
10.4
M2_82
10.2
M2_83
10.1
M2_84
9.3
M2_85
9.0
M2_86
8.8
M2_87
8.3
M2_88
8.3
M2_89
7.6
M2_90
6.1
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