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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • EVOLUTION

  • MAFIP
EVOLUTIONARY CEREBELLUM Show tissue menu
BRAIN27 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX
OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
CEREBELLUM - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:10.9 nTPM
Mouse:0.5 nTPM
Rat:0.8 nTPM

CEREBELLUM - Annotated protein expression
Pending normal tissue analysis

CEREBELLUM - HPA Brain Stereo-seq

CEREBELLUM - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.9
Sample id Sample description nTPM
Cerebellar cortex
nTPM: 5.6
2101 Male, age 74, right hemisphere 7.1
1768 Female, age 72, unknown 6.6
1769 Male, age 76, right hemisphere 5.9
2003 Female, age 85, right hemisphere 5.8
2006 Male, age 61, right hemisphere 5.6
1788 Male, age 55, unknown 4.7
2055 Female, age 91, right hemisphere 4.7
1774 Male, age 80, left hemisphere 4.1
Cerebellar nuclei
nTPM: 10.4
2783 Female, age 72, unknown 13.4
2882 Male, age 76, left hemisphere 11.4
1966 Female, age 91, left hemisphere 10.5
2177 Female, age 85, both hemispheres 10.4
1879 Male, age 55, unknown 10.3
2005 Male, age 80, left hemisphere 10.1
2318 Male, age 74, left hemisphere 9.5
1871 Male, age 74, unknown 9.3
2175 Male, age 61, right hemisphere 8.4
Cerebellar white matter
nTPM: 10.9
1931 Female, age 91, left hemisphere 13.2
2105 Male, age 74, right hemisphere 12.1
1864 Male, age 80, left hemisphere 10.6
2174 Male, age 61, right hemisphere 10.1
2773 Female, age 85, right hemisphere 10.0
1837 Male, age 76, left hemisphere 9.2
Flocculonodular lobe
nTPM: 4.8
1765 Male, age 55, unknown 6.0
1792 Male, age 74, unknown 6.0
1767 Male, age 76, left hemisphere 5.3
2004 Male, age 61, right hemisphere 5.1
1835 Female, age 85, right hemisphere 4.4
2176 Female, age 91, right hemisphere 4.1
1771 Male, age 80, left hemisphere 3.0
Vermis
nTPM: 5.6
1751 Male, age 74, right hemisphere 6.6
1766 Male, age 55, unknown 6.2
2460 Male, age 61, both hemispheres 5.8
1770 Male, age 76, left hemisphere 5.7
1825 Male, age 74, unknown 5.7
1928 Female, age 72, unknown 5.7
1988 Female, age 85, left hemisphere 5.5
2834 Male, age 80, left hemisphere 4.8
1778 Female, age 91, left hemisphere 4.6

CEREBELLUM - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.5
Mouse sample Sample description nTPM
Cerebellum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A 0.3
Sample B 0.5
Sample C 0.8
Sample D 0.4

CEREBELLUM - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.8
Rat sample Sample description nTPM
Cerebellum
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A 1.0
Sample A 0.6
Sample A 0.8
Sample A 0.6

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