On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
152.6
nTPM
FANTOM5:
68.8
Scaled Tags Per Million
Macaque:
69.3
nTPM
Mouse:
88.3
nTPM
Rat:
81.2
nTPM
Pig:
67.7
nTPM
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 129.7
2193
Male, age 75, both hemispheres
134.8
2818
Female, age 79, both hemispheres
131.5
2819
Male, age 47, both hemispheres
128.5
2734
Male, age 80, both hemispheres
124.1
Cervical spinal cord, central gray nTPM: 138.2
2565
Male, age 75, midline
173.2
2816
Male, age 47, midline
147.8
2194
Female, age 79, both hemispheres
134.6
1981
Female, age 72, midline
121.2
2048
Male, age 55, midline
114.3
Cervical spinal cord, dorsal horn nTPM: 147.1
2721
Male, age 90, both hemispheres
203.8
2297
Male, age 75, both hemispheres
167.5
1877
Male, age 55, unknown
160.0
2069
Male, age 47, both hemispheres
123.7
2296
Male, age 66, both hemispheres
117.7
2173
Female, age 72, unknown
109.7
Cervical spinal cord, ventral horn nTPM: 152.6
2820
Female, age 79, both hemispheres
184.4
2809
Male, age 90, both hemispheres
169.4
2480
Male, age 75, both hemispheres
169.2
2295
Male, age 66, both hemispheres
146.2
2068
Male, age 55, unknown
133.0
2098
Female, age 72, unknown
113.2
Dorsal funiculus (white matter) nTPM: 126.0
2128
Male, age 75, both hemispheres
142.8
2817
Male, age 47, both hemispheres
135.5
2812
Male, age 66, both hemispheres
129.1
2064
Female, age 79, both hemispheres
118.7
2810
Male, age 90, both hemispheres
103.6
Lateral funiculus (white matter) nTPM: 126.0
2294
Male, age 66, both hemispheres
150.7
2192
Male, age 75, both hemispheres
145.0
2094
Female, age 79, both hemispheres
114.9
2099
Male, age 90, both hemispheres
93.5
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 67.8
Samples: 2
Max nTPM: 94.1
Min nTPM: 41.4
Sample A
41.4
Sample B
94.1
Ventral spinal cord nTPM: 69.3
Samples: 1
Max nTPM: 69.3
Min nTPM: 69.3
Sample A
69.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 67.7
Samples: 4
Max nTPM: 85.9
Min nTPM: 53.8
Sample A
Female
85.9
Sample B
Female
58.9
Sample C
Male
53.8
Sample D
Male
72.3
Ventral spinal cord nTPM: 64.1
Samples: 4
Max nTPM: 74.5
Min nTPM: 57.4
Sample A
Female
74.5
Sample B
Female
57.4
Sample C
Male
66.2
Sample D
Male
58.1
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 88.3
Samples: 4
Max nTPM: 95.9
Min nTPM: 82.5
Sample A
82.5
Sample B
95.9
Sample C
89.5
Sample D
85.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 81.2
Samples: 4
Max nTPM: 84.9
Min nTPM: 78.9
Sample A
80.7
Sample A
84.9
Sample A
78.9
Sample A
80.2
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The Human Protein Atlas project is funded
