A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.6
nTPM
Monaco:
304.9
nTPM
Schmiedel:
135.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.6
HPA sample
nTPM
Memory B-cell nTPM: 20.6
Samples: 6
Max nTPM: 25.6
Min nTPM: 17.0
P10809_1017
18.3
P10809_1025
25.6
P10809_1044
22.7
P10809_1063
18.4
P10809_1092
21.6
P10809_1105
17.0
Naive B-cell nTPM: 19.7
Samples: 6
Max nTPM: 28.2
Min nTPM: 10.4
P10809_1011
20.2
P10809_1029
28.2
P10809_1048
10.4
P10809_1067
16.1
P10809_1091
22.1
P10809_1104
21.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
304.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 242.1
Samples: 4
Max nTPM: 285.2
Min nTPM: 205.3
RHH5310_R3677
205.3
RHH5218_R3590
271.3
RHH5247_R3619
206.7
RHH5276_R3648
285.2
Naive B-cell nTPM: 304.9
Samples: 4
Max nTPM: 331.1
Min nTPM: 289.1
RHH5308_R3675
306.4
RHH5216_R3588
293.0
RHH5245_R3617
331.1
RHH5274_R3646
289.1
Non-switched memory B-cell nTPM: 209.4
Samples: 4
Max nTPM: 253.0
Min nTPM: 164.1
RHH5309_R3676
234.8
RHH5217_R3589
164.1
RHH5246_R3618
185.8
RHH5275_R3647
253.0
Plasmablast nTPM: 162.8
Samples: 4
Max nTPM: 172.2
Min nTPM: 155.3
RHH5312_R3679
166.7
RHH5220_R3592
155.3
RHH5249_R3621
156.9
RHH5278_R3650
172.2
Switched memory B-cell nTPM: 216.0
Samples: 4
Max nTPM: 269.1
Min nTPM: 147.7
RHH5311_R3678
147.7
RHH5219_R3591
192.6
RHH5248_R3620
269.1
RHH5277_R3649
254.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.5
Schmiedel sample id
TPM
Naive B-cell TPM: 135.5
Samples: 91
Max TPM: 172.0
Min TPM: 70.4
B_CELL_NAIVE_1
172.0
B_CELL_NAIVE_2
167.9
B_CELL_NAIVE_3
166.2
B_CELL_NAIVE_4
164.2
B_CELL_NAIVE_5
158.5
B_CELL_NAIVE_6
157.2
B_CELL_NAIVE_7
157.0
B_CELL_NAIVE_8
156.3
B_CELL_NAIVE_9
155.0
B_CELL_NAIVE_10
154.3
B_CELL_NAIVE_11
152.7
B_CELL_NAIVE_12
152.1
B_CELL_NAIVE_13
151.7
B_CELL_NAIVE_14
151.6
B_CELL_NAIVE_15
150.3
B_CELL_NAIVE_16
150.3
B_CELL_NAIVE_17
149.4
B_CELL_NAIVE_18
148.2
B_CELL_NAIVE_19
148.0
B_CELL_NAIVE_20
147.7
B_CELL_NAIVE_21
146.3
B_CELL_NAIVE_22
146.0
B_CELL_NAIVE_23
145.4
B_CELL_NAIVE_24
143.2
B_CELL_NAIVE_25
143.1
B_CELL_NAIVE_26
142.9
B_CELL_NAIVE_27
142.8
B_CELL_NAIVE_28
142.5
B_CELL_NAIVE_29
142.5
B_CELL_NAIVE_30
142.4
B_CELL_NAIVE_31
141.8
B_CELL_NAIVE_32
141.5
B_CELL_NAIVE_33
139.1
B_CELL_NAIVE_34
138.9
B_CELL_NAIVE_35
138.6
B_CELL_NAIVE_36
138.6
B_CELL_NAIVE_37
138.2
B_CELL_NAIVE_38
138.1
B_CELL_NAIVE_39
138.0
B_CELL_NAIVE_40
138.0
B_CELL_NAIVE_41
137.9
B_CELL_NAIVE_42
136.7
B_CELL_NAIVE_43
136.6
B_CELL_NAIVE_44
136.6
B_CELL_NAIVE_45
136.6
B_CELL_NAIVE_46
136.1
B_CELL_NAIVE_47
135.5
B_CELL_NAIVE_48
135.4
B_CELL_NAIVE_49
135.2
B_CELL_NAIVE_50
135.1
B_CELL_NAIVE_51
134.2
B_CELL_NAIVE_52
133.8
B_CELL_NAIVE_53
133.8
B_CELL_NAIVE_54
132.6
B_CELL_NAIVE_55
132.2
B_CELL_NAIVE_56
131.9
B_CELL_NAIVE_57
130.9
B_CELL_NAIVE_58
130.4
B_CELL_NAIVE_59
130.4
B_CELL_NAIVE_60
130.3
B_CELL_NAIVE_61
129.3
B_CELL_NAIVE_62
129.2
B_CELL_NAIVE_63
128.9
B_CELL_NAIVE_64
128.7
B_CELL_NAIVE_65
128.1
B_CELL_NAIVE_66
127.5
B_CELL_NAIVE_67
127.4
B_CELL_NAIVE_68
127.3
B_CELL_NAIVE_69
127.2
B_CELL_NAIVE_70
125.8
B_CELL_NAIVE_71
125.6
B_CELL_NAIVE_72
124.7
B_CELL_NAIVE_73
124.7
B_CELL_NAIVE_74
123.9
B_CELL_NAIVE_75
123.7
B_CELL_NAIVE_76
122.8
B_CELL_NAIVE_77
122.8
B_CELL_NAIVE_78
122.5
B_CELL_NAIVE_79
121.4
B_CELL_NAIVE_80
120.6
B_CELL_NAIVE_81
117.9
B_CELL_NAIVE_82
117.7
B_CELL_NAIVE_83
117.4
B_CELL_NAIVE_84
115.2
B_CELL_NAIVE_85
113.7
B_CELL_NAIVE_86
111.2
B_CELL_NAIVE_87
110.3
B_CELL_NAIVE_88
109.2
B_CELL_NAIVE_89
106.5
B_CELL_NAIVE_90
106.5
B_CELL_NAIVE_91
70.4
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