A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.0
nTPM
Monaco:
243.5
nTPM
Schmiedel:
93.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.0
HPA sample
nTPM
NK-cell nTPM: 23.0
Samples: 6
Max nTPM: 38.1
Min nTPM: 10.2
P10809_1013
21.3
P10809_1033
38.1
P10809_1052
26.4
P10809_1071
13.2
P10809_1093
10.2
P10809_1103
28.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
243.5
Monaco sample
nTPM
NK-cell nTPM: 243.4
Samples: 4
Max nTPM: 278.8
Min nTPM: 204.5
RHH5316_R3683
204.5
RHH5224_R3596
239.9
RHH5253_R3625
250.5
RHH5282_R3654
278.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.8
Schmiedel sample id
TPM
NK-cell TPM: 93.8
Samples: 90
Max TPM: 116.8
Min TPM: 61.5
NK_1
116.8
NK_2
113.8
NK_3
112.2
NK_4
111.9
NK_5
111.2
NK_6
109.2
NK_7
108.9
NK_8
108.2
NK_9
107.7
NK_10
106.5
NK_11
106.0
NK_12
105.8
NK_13
105.3
NK_14
104.2
NK_15
103.8
NK_16
103.2
NK_17
102.8
NK_18
102.5
NK_19
102.5
NK_20
102.3
NK_21
102.1
NK_22
101.5
NK_23
101.1
NK_24
101.1
NK_25
100.9
NK_26
100.6
NK_27
100.4
NK_28
100.4
NK_29
100.2
NK_30
100.1
NK_31
99.6
NK_32
99.1
NK_33
98.5
NK_34
98.0
NK_35
97.7
NK_36
97.5
NK_37
97.4
NK_38
97.1
NK_39
96.8
NK_40
96.7
NK_41
96.2
NK_42
95.7
NK_43
94.5
NK_44
94.3
NK_45
93.8
NK_46
93.8
NK_47
91.9
NK_48
91.9
NK_49
91.6
NK_50
91.1
NK_51
91.0
NK_52
90.9
NK_53
90.9
NK_54
90.4
NK_55
89.8
NK_56
89.4
NK_57
89.1
NK_58
89.0
NK_59
89.0
NK_60
88.3
NK_61
88.1
NK_62
87.6
NK_63
87.5
NK_64
86.9
NK_65
86.6
NK_66
86.5
NK_67
86.3
NK_68
86.3
NK_69
86.2
NK_70
86.2
NK_71
85.9
NK_72
85.6
NK_73
85.5
NK_74
85.2
NK_75
85.2
NK_76
84.6
NK_77
84.5
NK_78
83.6
NK_79
83.1
NK_80
82.8
NK_81
82.3
NK_82
81.2
NK_83
79.5
NK_84
78.4
NK_85
77.7
NK_86
77.1
NK_87
75.7
NK_88
75.4
NK_89
74.4
NK_90
61.5
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