A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.7
nTPM
Monaco:
209.9
nTPM
Schmiedel:
69.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
HPA sample
nTPM
Classical monocyte nTPM: 21.5
Samples: 6
Max nTPM: 26.8
Min nTPM: 17.9
P10809_1003
26.8
P10809_1020
23.9
P10809_1039
21.5
P10809_1058
19.8
P10809_1080
17.9
P10809_1107
19.2
Intermediate monocyte nTPM: 22.2
Samples: 6
Max nTPM: 34.4
Min nTPM: 12.5
P10809_1004
19.4
P10809_1023
34.4
P10809_1042
25.2
P10809_1061
24.1
P10809_1081
17.7
P10809_1108
12.5
Non-classical monocyte nTPM: 22.7
Samples: 5
Max nTPM: 39.9
Min nTPM: 11.7
P10809_1005
24.8
P10809_1053
39.9
P10809_1072
11.7
P10809_1082
16.8
P10809_1109
20.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.9
Monaco sample
nTPM
Classical monocyte nTPM: 186.1
Samples: 4
Max nTPM: 241.8
Min nTPM: 133.0
RHH5313_R3680
198.0
RHH5221_R3593
133.0
RHH5250_R3622
171.5
RHH5279_R3651
241.8
Intermediate monocyte nTPM: 146.5
Samples: 4
Max nTPM: 179.4
Min nTPM: 118.7
RHH5314_R3681
179.4
RHH5222_R3594
147.7
RHH5251_R3623
118.7
RHH5280_R3652
140.2
Non-classical monocyte nTPM: 209.9
Samples: 4
Max nTPM: 233.9
Min nTPM: 178.0
RHH5315_R3682
233.9
RHH5223_R3595
196.2
RHH5252_R3624
178.0
RHH5281_R3653
231.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.8
Schmiedel sample id
TPM
Classical monocyte TPM: 58.1
Samples: 91
Max TPM: 73.2
Min TPM: 43.0
MONOCYTES_1
73.2
MONOCYTES_2
72.4
MONOCYTES_3
71.4
MONOCYTES_4
69.5
MONOCYTES_5
69.4
MONOCYTES_6
69.2
MONOCYTES_7
67.7
MONOCYTES_8
67.7
MONOCYTES_9
66.8
MONOCYTES_10
65.8
MONOCYTES_11
65.7
MONOCYTES_12
65.2
MONOCYTES_13
64.9
MONOCYTES_14
64.7
MONOCYTES_15
64.5
MONOCYTES_16
64.4
MONOCYTES_17
64.0
MONOCYTES_18
64.0
MONOCYTES_19
64.0
MONOCYTES_20
63.4
MONOCYTES_21
63.3
MONOCYTES_22
62.7
MONOCYTES_23
62.5
MONOCYTES_24
62.3
MONOCYTES_25
62.0
MONOCYTES_26
61.9
MONOCYTES_27
61.8
MONOCYTES_28
61.3
MONOCYTES_29
60.8
MONOCYTES_30
60.0
MONOCYTES_31
59.9
MONOCYTES_32
59.6
MONOCYTES_33
59.3
MONOCYTES_34
59.2
MONOCYTES_35
59.1
MONOCYTES_36
59.1
MONOCYTES_37
59.0
MONOCYTES_38
59.0
MONOCYTES_39
59.0
MONOCYTES_40
58.9
MONOCYTES_41
58.4
MONOCYTES_42
58.4
MONOCYTES_43
57.7
MONOCYTES_44
57.7
MONOCYTES_45
57.7
MONOCYTES_46
57.2
MONOCYTES_47
57.1
MONOCYTES_48
56.9
MONOCYTES_49
56.8
MONOCYTES_50
56.7
MONOCYTES_51
56.6
MONOCYTES_52
56.4
MONOCYTES_53
56.4
MONOCYTES_54
56.3
MONOCYTES_55
56.1
MONOCYTES_56
56.1
MONOCYTES_57
55.8
MONOCYTES_58
55.8
MONOCYTES_59
55.8
MONOCYTES_60
55.7
MONOCYTES_61
55.5
MONOCYTES_62
55.5
MONOCYTES_63
55.0
MONOCYTES_64
54.5
MONOCYTES_65
53.6
MONOCYTES_66
53.6
MONOCYTES_67
53.4
MONOCYTES_68
53.3
MONOCYTES_69
53.1
MONOCYTES_70
53.1
MONOCYTES_71
53.0
MONOCYTES_72
52.9
MONOCYTES_73
52.7
MONOCYTES_74
52.6
MONOCYTES_75
52.4
MONOCYTES_76
52.1
MONOCYTES_77
51.7
MONOCYTES_78
51.6
MONOCYTES_79
51.2
MONOCYTES_80
51.1
MONOCYTES_81
51.0
MONOCYTES_82
51.0
MONOCYTES_83
50.9
MONOCYTES_84
50.7
MONOCYTES_85
50.1
MONOCYTES_86
50.0
MONOCYTES_87
49.0
MONOCYTES_88
48.4
MONOCYTES_89
48.0
MONOCYTES_90
45.5
MONOCYTES_91
43.0
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Non-classical monocyte TPM: 69.8
Samples: 90
Max TPM: 85.6
Min TPM: 53.1
M2_1
85.6
M2_2
83.2
M2_3
81.4
M2_4
81.4
M2_5
81.3
M2_6
81.3
M2_7
80.5
M2_8
80.5
M2_9
80.4
M2_10
80.1
M2_11
79.9
M2_12
79.6
M2_13
79.6
M2_14
79.5
M2_15
79.5
M2_16
78.4
M2_17
78.1
M2_18
76.7
M2_19
76.3
M2_20
76.1
M2_21
75.8
M2_22
75.3
M2_23
75.0
M2_24
74.4
M2_25
74.2
M2_26
74.0
M2_27
73.3
M2_28
73.1
M2_29
72.8
M2_30
72.5
M2_31
72.4
M2_32
72.3
M2_33
72.2
M2_34
71.9
M2_35
71.7
M2_36
71.7
M2_37
71.6
M2_38
71.5
M2_39
71.4
M2_40
71.2
M2_41
71.1
M2_42
71.0
M2_43
70.8
M2_44
70.2
M2_45
69.9
M2_46
69.7
M2_47
69.5
M2_48
69.4
M2_49
69.0
M2_50
68.8
M2_51
68.7
M2_52
68.5
M2_53
68.4
M2_54
68.3
M2_55
68.2
M2_56
68.2
M2_57
67.2
M2_58
67.2
M2_59
66.9
M2_60
66.8
M2_61
66.7
M2_62
66.7
M2_63
66.6
M2_64
66.6
M2_65
66.3
M2_66
65.4
M2_67
65.3
M2_68
65.3
M2_69
65.2
M2_70
65.0
M2_71
64.7
M2_72
64.3
M2_73
63.5
M2_74
63.0
M2_75
62.8
M2_76
62.6
M2_77
60.6
M2_78
60.4
M2_79
59.7
M2_80
59.6
M2_81
59.4
M2_82
59.2
M2_83
59.2
M2_84
59.0
M2_85
58.5
M2_86
58.1
M2_87
54.9
M2_88
54.4
M2_89
54.0
M2_90
53.1
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