A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.2
nTPM
Monaco:
192.6
nTPM
Schmiedel:
67.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.2
HPA sample
nTPM
Memory B-cell nTPM: 49.2
Samples: 6
Max nTPM: 100.6
Min nTPM: 23.3
P10809_1017
33.3
P10809_1025
65.5
P10809_1044
100.6
P10809_1063
26.6
P10809_1092
45.8
P10809_1105
23.3
Naive B-cell nTPM: 31.2
Samples: 6
Max nTPM: 46.3
Min nTPM: 14.4
P10809_1011
24.7
P10809_1029
46.3
P10809_1048
30.8
P10809_1067
14.4
P10809_1091
38.3
P10809_1104
32.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
192.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 87.8
Samples: 4
Max nTPM: 97.1
Min nTPM: 78.2
RHH5310_R3677
78.2
RHH5218_R3590
94.8
RHH5247_R3619
97.1
RHH5276_R3648
80.9
Naive B-cell nTPM: 70.3
Samples: 4
Max nTPM: 75.9
Min nTPM: 61.0
RHH5308_R3675
75.9
RHH5216_R3588
75.2
RHH5245_R3617
61.0
RHH5274_R3646
69.2
Non-switched memory B-cell nTPM: 101.2
Samples: 4
Max nTPM: 115.9
Min nTPM: 86.3
RHH5309_R3676
96.5
RHH5217_R3589
86.3
RHH5246_R3618
106.2
RHH5275_R3647
115.9
Plasmablast nTPM: 192.6
Samples: 4
Max nTPM: 267.2
Min nTPM: 120.7
RHH5312_R3679
120.7
RHH5220_R3592
267.2
RHH5249_R3621
192.8
RHH5278_R3650
189.7
Switched memory B-cell nTPM: 81.5
Samples: 4
Max nTPM: 103.0
Min nTPM: 66.7
RHH5311_R3678
66.7
RHH5219_R3591
103.0
RHH5248_R3620
69.9
RHH5277_R3649
86.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.2
Schmiedel sample id
TPM
Naive B-cell TPM: 67.2
Samples: 91
Max TPM: 91.9
Min TPM: 36.3
B_CELL_NAIVE_1
91.9
B_CELL_NAIVE_2
87.2
B_CELL_NAIVE_3
86.4
B_CELL_NAIVE_4
84.1
B_CELL_NAIVE_5
83.0
B_CELL_NAIVE_6
82.5
B_CELL_NAIVE_7
82.2
B_CELL_NAIVE_8
81.8
B_CELL_NAIVE_9
81.6
B_CELL_NAIVE_10
81.3
B_CELL_NAIVE_11
80.1
B_CELL_NAIVE_12
79.0
B_CELL_NAIVE_13
78.8
B_CELL_NAIVE_14
78.8
B_CELL_NAIVE_15
78.2
B_CELL_NAIVE_16
78.2
B_CELL_NAIVE_17
78.1
B_CELL_NAIVE_18
77.6
B_CELL_NAIVE_19
77.3
B_CELL_NAIVE_20
75.7
B_CELL_NAIVE_21
75.5
B_CELL_NAIVE_22
74.8
B_CELL_NAIVE_23
74.8
B_CELL_NAIVE_24
74.6
B_CELL_NAIVE_25
73.9
B_CELL_NAIVE_26
73.5
B_CELL_NAIVE_27
73.0
B_CELL_NAIVE_28
72.9
B_CELL_NAIVE_29
72.6
B_CELL_NAIVE_30
72.3
B_CELL_NAIVE_31
72.2
B_CELL_NAIVE_32
72.1
B_CELL_NAIVE_33
71.9
B_CELL_NAIVE_34
71.4
B_CELL_NAIVE_35
71.3
B_CELL_NAIVE_36
71.1
B_CELL_NAIVE_37
71.1
B_CELL_NAIVE_38
70.9
B_CELL_NAIVE_39
70.8
B_CELL_NAIVE_40
70.6
B_CELL_NAIVE_41
70.5
B_CELL_NAIVE_42
70.3
B_CELL_NAIVE_43
70.0
B_CELL_NAIVE_44
69.9
B_CELL_NAIVE_45
69.5
B_CELL_NAIVE_46
69.4
B_CELL_NAIVE_47
68.8
B_CELL_NAIVE_48
68.4
B_CELL_NAIVE_49
68.1
B_CELL_NAIVE_50
67.7
B_CELL_NAIVE_51
67.5
B_CELL_NAIVE_52
67.1
B_CELL_NAIVE_53
67.0
B_CELL_NAIVE_54
66.3
B_CELL_NAIVE_55
66.1
B_CELL_NAIVE_56
66.0
B_CELL_NAIVE_57
65.9
B_CELL_NAIVE_58
65.3
B_CELL_NAIVE_59
65.2
B_CELL_NAIVE_60
65.0
B_CELL_NAIVE_61
64.5
B_CELL_NAIVE_62
64.5
B_CELL_NAIVE_63
64.1
B_CELL_NAIVE_64
63.8
B_CELL_NAIVE_65
63.7
B_CELL_NAIVE_66
63.1
B_CELL_NAIVE_67
62.6
B_CELL_NAIVE_68
62.0
B_CELL_NAIVE_69
61.8
B_CELL_NAIVE_70
61.4
B_CELL_NAIVE_71
60.3
B_CELL_NAIVE_72
59.9
B_CELL_NAIVE_73
59.0
B_CELL_NAIVE_74
58.8
B_CELL_NAIVE_75
58.0
B_CELL_NAIVE_76
58.0
B_CELL_NAIVE_77
56.9
B_CELL_NAIVE_78
56.1
B_CELL_NAIVE_79
55.9
B_CELL_NAIVE_80
53.1
B_CELL_NAIVE_81
53.0
B_CELL_NAIVE_82
50.0
B_CELL_NAIVE_83
49.4
B_CELL_NAIVE_84
48.4
B_CELL_NAIVE_85
44.8
B_CELL_NAIVE_86
43.6
B_CELL_NAIVE_87
41.1
B_CELL_NAIVE_88
40.2
B_CELL_NAIVE_89
37.2
B_CELL_NAIVE_90
36.4
B_CELL_NAIVE_91
36.3
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The Human Protein Atlas project is funded
