A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.9
nTPM
Monaco:
90.4
nTPM
Schmiedel:
94.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.9
HPA sample
nTPM
NK-cell nTPM: 33.9
Samples: 6
Max nTPM: 57.1
Min nTPM: 0.1
P10809_1013
41.2
P10809_1033
47.4
P10809_1052
43.9
P10809_1071
13.5
P10809_1093
0.1
P10809_1103
57.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
Monaco sample
nTPM
NK-cell nTPM: 90.4
Samples: 4
Max nTPM: 105.7
Min nTPM: 70.4
RHH5316_R3683
105.7
RHH5224_R3596
70.4
RHH5253_R3625
94.8
RHH5282_R3654
90.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.8
Schmiedel sample id
TPM
NK-cell TPM: 94.8
Samples: 90
Max TPM: 118.9
Min TPM: 64.1
NK_1
118.9
NK_2
118.7
NK_3
118.7
NK_4
118.3
NK_5
116.6
NK_6
114.2
NK_7
112.8
NK_8
112.6
NK_9
112.5
NK_10
111.2
NK_11
110.4
NK_12
110.1
NK_13
108.9
NK_14
108.0
NK_15
106.1
NK_16
105.9
NK_17
105.9
NK_18
104.8
NK_19
104.4
NK_20
104.1
NK_21
103.6
NK_22
103.3
NK_23
102.6
NK_24
102.1
NK_25
101.9
NK_26
101.8
NK_27
101.5
NK_28
101.5
NK_29
101.4
NK_30
101.0
NK_31
100.7
NK_32
100.5
NK_33
100.1
NK_34
100.0
NK_35
99.7
NK_36
98.8
NK_37
97.9
NK_38
97.9
NK_39
97.6
NK_40
97.1
NK_41
96.9
NK_42
96.9
NK_43
96.0
NK_44
96.0
NK_45
95.5
NK_46
95.2
NK_47
95.2
NK_48
94.5
NK_49
93.9
NK_50
93.9
NK_51
93.8
NK_52
93.7
NK_53
93.6
NK_54
93.0
NK_55
93.0
NK_56
91.9
NK_57
90.6
NK_58
89.7
NK_59
89.6
NK_60
89.3
NK_61
89.1
NK_62
89.0
NK_63
88.3
NK_64
88.3
NK_65
87.2
NK_66
86.7
NK_67
86.1
NK_68
85.9
NK_69
85.6
NK_70
85.2
NK_71
84.7
NK_72
84.2
NK_73
84.0
NK_74
83.8
NK_75
83.3
NK_76
82.7
NK_77
82.1
NK_78
80.9
NK_79
80.2
NK_80
79.1
NK_81
79.0
NK_82
78.9
NK_83
78.7
NK_84
78.4
NK_85
74.9
NK_86
70.2
NK_87
69.9
NK_88
67.3
NK_89
64.9
NK_90
64.1
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