A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
48.6
nTPM
Monaco:
102.5
nTPM
Schmiedel:
83.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.6
HPA sample
nTPM
Classical monocyte nTPM: 48.6
Samples: 6
Max nTPM: 87.4
Min nTPM: 25.7
P10809_1003
40.9
P10809_1020
54.1
P10809_1039
87.4
P10809_1058
25.7
P10809_1080
33.9
P10809_1107
49.7
Intermediate monocyte nTPM: 47.1
Samples: 6
Max nTPM: 79.1
Min nTPM: 23.3
P10809_1004
44.0
P10809_1023
42.4
P10809_1042
40.6
P10809_1061
53.3
P10809_1081
23.3
P10809_1108
79.1
Non-classical monocyte nTPM: 35.1
Samples: 5
Max nTPM: 72.1
Min nTPM: 5.7
P10809_1005
50.6
P10809_1053
25.1
P10809_1072
5.7
P10809_1082
21.8
P10809_1109
72.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.5
Monaco sample
nTPM
Classical monocyte nTPM: 99.2
Samples: 4
Max nTPM: 107.3
Min nTPM: 85.0
RHH5313_R3680
99.6
RHH5221_R3593
104.9
RHH5250_R3622
85.0
RHH5279_R3651
107.3
Intermediate monocyte nTPM: 94.5
Samples: 4
Max nTPM: 120.1
Min nTPM: 74.3
RHH5314_R3681
101.7
RHH5222_R3594
120.1
RHH5251_R3623
81.9
RHH5280_R3652
74.3
Non-classical monocyte nTPM: 102.4
Samples: 4
Max nTPM: 136.7
Min nTPM: 76.1
RHH5315_R3682
136.7
RHH5223_R3595
103.3
RHH5252_R3624
93.7
RHH5281_R3653
76.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.2
Schmiedel sample id
TPM
Classical monocyte TPM: 78.6
Samples: 91
Max TPM: 95.1
Min TPM: 57.5
MONOCYTES_1
95.1
MONOCYTES_2
92.3
MONOCYTES_3
91.5
MONOCYTES_4
90.3
MONOCYTES_5
90.1
MONOCYTES_6
90.0
MONOCYTES_7
89.4
MONOCYTES_8
89.2
MONOCYTES_9
89.2
MONOCYTES_10
87.5
MONOCYTES_11
87.2
MONOCYTES_12
87.2
MONOCYTES_13
86.8
MONOCYTES_14
86.6
MONOCYTES_15
86.4
MONOCYTES_16
86.1
MONOCYTES_17
85.8
MONOCYTES_18
85.7
MONOCYTES_19
85.2
MONOCYTES_20
85.2
MONOCYTES_21
85.1
MONOCYTES_22
85.0
MONOCYTES_23
83.8
MONOCYTES_24
83.5
MONOCYTES_25
83.0
MONOCYTES_26
83.0
MONOCYTES_27
82.9
MONOCYTES_28
82.8
MONOCYTES_29
82.4
MONOCYTES_30
82.0
MONOCYTES_31
81.5
MONOCYTES_32
81.2
MONOCYTES_33
81.1
MONOCYTES_34
81.0
MONOCYTES_35
80.8
MONOCYTES_36
80.3
MONOCYTES_37
80.2
MONOCYTES_38
80.0
MONOCYTES_39
79.9
MONOCYTES_40
79.8
MONOCYTES_41
79.8
MONOCYTES_42
79.7
MONOCYTES_43
79.4
MONOCYTES_44
79.1
MONOCYTES_45
79.1
MONOCYTES_46
78.9
MONOCYTES_47
78.8
MONOCYTES_48
78.7
MONOCYTES_49
78.6
MONOCYTES_50
78.6
MONOCYTES_51
78.1
MONOCYTES_52
78.0
MONOCYTES_53
77.7
MONOCYTES_54
77.6
MONOCYTES_55
77.2
MONOCYTES_56
77.2
MONOCYTES_57
77.1
MONOCYTES_58
76.9
MONOCYTES_59
76.9
MONOCYTES_60
76.7
MONOCYTES_61
76.6
MONOCYTES_62
76.5
MONOCYTES_63
76.1
MONOCYTES_64
75.7
MONOCYTES_65
75.3
MONOCYTES_66
75.2
MONOCYTES_67
75.0
MONOCYTES_68
74.8
MONOCYTES_69
74.6
MONOCYTES_70
74.1
MONOCYTES_71
73.7
MONOCYTES_72
73.5
MONOCYTES_73
73.4
MONOCYTES_74
73.2
MONOCYTES_75
72.8
MONOCYTES_76
72.5
MONOCYTES_77
72.0
MONOCYTES_78
71.7
MONOCYTES_79
71.4
MONOCYTES_80
70.1
MONOCYTES_81
70.0
MONOCYTES_82
68.9
MONOCYTES_83
67.6
MONOCYTES_84
65.3
MONOCYTES_85
64.1
MONOCYTES_86
63.8
MONOCYTES_87
62.5
MONOCYTES_88
62.1
MONOCYTES_89
60.4
MONOCYTES_90
60.1
MONOCYTES_91
57.5
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Non-classical monocyte TPM: 83.2
Samples: 90
Max TPM: 109.8
Min TPM: 52.3
M2_1
109.8
M2_2
103.2
M2_3
101.9
M2_4
99.8
M2_5
99.3
M2_6
98.0
M2_7
96.2
M2_8
96.1
M2_9
95.4
M2_10
93.6
M2_11
93.6
M2_12
92.9
M2_13
92.8
M2_14
92.0
M2_15
91.9
M2_16
91.9
M2_17
91.8
M2_18
91.2
M2_19
91.2
M2_20
90.9
M2_21
90.8
M2_22
90.0
M2_23
89.6
M2_24
89.5
M2_25
89.2
M2_26
89.2
M2_27
89.1
M2_28
88.6
M2_29
88.4
M2_30
88.3
M2_31
88.2
M2_32
88.1
M2_33
87.9
M2_34
87.6
M2_35
87.3
M2_36
87.1
M2_37
87.0
M2_38
87.0
M2_39
87.0
M2_40
86.9
M2_41
86.8
M2_42
86.3
M2_43
86.2
M2_44
85.2
M2_45
85.2
M2_46
84.6
M2_47
84.5
M2_48
84.1
M2_49
83.9
M2_50
83.8
M2_51
83.4
M2_52
83.4
M2_53
82.6
M2_54
82.3
M2_55
82.0
M2_56
81.3
M2_57
81.1
M2_58
79.9
M2_59
79.8
M2_60
79.1
M2_61
78.9
M2_62
78.6
M2_63
78.5
M2_64
78.2
M2_65
77.9
M2_66
77.7
M2_67
77.3
M2_68
76.3
M2_69
76.0
M2_70
75.9
M2_71
75.8
M2_72
75.7
M2_73
75.2
M2_74
75.0
M2_75
74.7
M2_76
74.2
M2_77
72.2
M2_78
72.0
M2_79
71.7
M2_80
69.0
M2_81
68.5
M2_82
67.5
M2_83
66.6
M2_84
66.1
M2_85
65.4
M2_86
63.7
M2_87
63.3
M2_88
61.4
M2_89
59.6
M2_90
52.3
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