A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.4
nTPM
Monaco:
306.9
nTPM
Schmiedel:
148.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
HPA sample
nTPM
Memory B-cell nTPM: 12.4
Samples: 6
Max nTPM: 21.3
Min nTPM: 4.9
P10809_1017
8.9
P10809_1025
16.0
P10809_1044
10.5
P10809_1063
4.9
P10809_1092
12.5
P10809_1105
21.3
Naive B-cell nTPM: 11.6
Samples: 6
Max nTPM: 16.5
Min nTPM: 7.5
P10809_1011
11.3
P10809_1029
8.8
P10809_1048
16.4
P10809_1067
8.9
P10809_1091
7.5
P10809_1104
16.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 278.0
Samples: 4
Max nTPM: 408.2
Min nTPM: 196.7
RHH5310_R3677
283.9
RHH5218_R3590
223.1
RHH5247_R3619
408.2
RHH5276_R3648
196.7
Naive B-cell nTPM: 285.3
Samples: 4
Max nTPM: 374.6
Min nTPM: 237.7
RHH5308_R3675
237.7
RHH5216_R3588
374.6
RHH5245_R3617
247.2
RHH5274_R3646
281.8
Non-switched memory B-cell nTPM: 280.9
Samples: 4
Max nTPM: 433.0
Min nTPM: 188.6
RHH5309_R3676
303.7
RHH5217_R3589
198.3
RHH5246_R3618
433.0
RHH5275_R3647
188.6
Plasmablast nTPM: 151.7
Samples: 4
Max nTPM: 201.9
Min nTPM: 121.8
RHH5312_R3679
121.8
RHH5220_R3592
159.6
RHH5249_R3621
201.9
RHH5278_R3650
123.6
Switched memory B-cell nTPM: 306.9
Samples: 4
Max nTPM: 331.3
Min nTPM: 269.6
RHH5311_R3678
331.3
RHH5219_R3591
305.7
RHH5248_R3620
320.9
RHH5277_R3649
269.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.0
Schmiedel sample id
TPM
Naive B-cell TPM: 148.0
Samples: 91
Max TPM: 208.5
Min TPM: 104.1
B_CELL_NAIVE_1
208.5
B_CELL_NAIVE_2
195.4
B_CELL_NAIVE_3
191.6
B_CELL_NAIVE_4
191.1
B_CELL_NAIVE_5
184.8
B_CELL_NAIVE_6
180.9
B_CELL_NAIVE_7
179.5
B_CELL_NAIVE_8
177.6
B_CELL_NAIVE_9
177.3
B_CELL_NAIVE_10
177.3
B_CELL_NAIVE_11
176.1
B_CELL_NAIVE_12
176.1
B_CELL_NAIVE_13
174.8
B_CELL_NAIVE_14
172.4
B_CELL_NAIVE_15
172.3
B_CELL_NAIVE_16
170.6
B_CELL_NAIVE_17
170.6
B_CELL_NAIVE_18
170.0
B_CELL_NAIVE_19
169.6
B_CELL_NAIVE_20
168.9
B_CELL_NAIVE_21
167.7
B_CELL_NAIVE_22
167.0
B_CELL_NAIVE_23
166.9
B_CELL_NAIVE_24
165.5
B_CELL_NAIVE_25
165.2
B_CELL_NAIVE_26
164.3
B_CELL_NAIVE_27
163.4
B_CELL_NAIVE_28
163.0
B_CELL_NAIVE_29
159.4
B_CELL_NAIVE_30
156.9
B_CELL_NAIVE_31
155.2
B_CELL_NAIVE_32
155.1
B_CELL_NAIVE_33
154.7
B_CELL_NAIVE_34
153.4
B_CELL_NAIVE_35
152.2
B_CELL_NAIVE_36
152.0
B_CELL_NAIVE_37
151.1
B_CELL_NAIVE_38
150.9
B_CELL_NAIVE_39
150.5
B_CELL_NAIVE_40
148.8
B_CELL_NAIVE_41
148.7
B_CELL_NAIVE_42
148.0
B_CELL_NAIVE_43
145.3
B_CELL_NAIVE_44
145.1
B_CELL_NAIVE_45
145.0
B_CELL_NAIVE_46
144.8
B_CELL_NAIVE_47
144.4
B_CELL_NAIVE_48
143.9
B_CELL_NAIVE_49
143.5
B_CELL_NAIVE_50
143.1
B_CELL_NAIVE_51
142.6
B_CELL_NAIVE_52
141.8
B_CELL_NAIVE_53
141.2
B_CELL_NAIVE_54
140.5
B_CELL_NAIVE_55
140.2
B_CELL_NAIVE_56
139.4
B_CELL_NAIVE_57
138.7
B_CELL_NAIVE_58
138.6
B_CELL_NAIVE_59
138.0
B_CELL_NAIVE_60
138.0
B_CELL_NAIVE_61
137.5
B_CELL_NAIVE_62
136.0
B_CELL_NAIVE_63
135.6
B_CELL_NAIVE_64
135.5
B_CELL_NAIVE_65
134.6
B_CELL_NAIVE_66
134.6
B_CELL_NAIVE_67
133.9
B_CELL_NAIVE_68
133.0
B_CELL_NAIVE_69
132.7
B_CELL_NAIVE_70
131.6
B_CELL_NAIVE_71
131.6
B_CELL_NAIVE_72
130.8
B_CELL_NAIVE_73
128.2
B_CELL_NAIVE_74
127.7
B_CELL_NAIVE_75
127.4
B_CELL_NAIVE_76
124.6
B_CELL_NAIVE_77
123.9
B_CELL_NAIVE_78
122.6
B_CELL_NAIVE_79
122.2
B_CELL_NAIVE_80
122.1
B_CELL_NAIVE_81
121.6
B_CELL_NAIVE_82
120.1
B_CELL_NAIVE_83
118.9
B_CELL_NAIVE_84
118.0
B_CELL_NAIVE_85
117.1
B_CELL_NAIVE_86
116.8
B_CELL_NAIVE_87
114.0
B_CELL_NAIVE_88
112.6
B_CELL_NAIVE_89
110.4
B_CELL_NAIVE_90
109.1
B_CELL_NAIVE_91
104.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.