A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.9
nTPM
Monaco:
141.1
nTPM
Schmiedel:
88.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.9
HPA sample
nTPM
Classical monocyte nTPM: 8.5
Samples: 6
Max nTPM: 10.6
Min nTPM: 6.4
P10809_1003
8.8
P10809_1020
7.5
P10809_1039
10.6
P10809_1058
7.5
P10809_1080
6.4
P10809_1107
10.5
Intermediate monocyte nTPM: 4.6
Samples: 6
Max nTPM: 6.9
Min nTPM: 2.5
P10809_1004
6.9
P10809_1023
4.1
P10809_1042
5.1
P10809_1061
3.9
P10809_1081
5.0
P10809_1108
2.5
Non-classical monocyte nTPM: 8.9
Samples: 5
Max nTPM: 18.3
Min nTPM: 5.6
P10809_1005
6.9
P10809_1053
5.9
P10809_1072
18.3
P10809_1082
5.6
P10809_1109
7.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.1
Monaco sample
nTPM
Classical monocyte nTPM: 141.1
Samples: 4
Max nTPM: 156.3
Min nTPM: 130.5
RHH5313_R3680
156.3
RHH5221_R3593
134.4
RHH5250_R3622
130.5
RHH5279_R3651
143.0
Intermediate monocyte nTPM: 115.9
Samples: 4
Max nTPM: 135.2
Min nTPM: 88.7
RHH5314_R3681
125.6
RHH5222_R3594
135.2
RHH5251_R3623
114.0
RHH5280_R3652
88.7
Non-classical monocyte nTPM: 128.8
Samples: 4
Max nTPM: 141.9
Min nTPM: 108.4
RHH5315_R3682
129.8
RHH5223_R3595
141.9
RHH5252_R3624
108.4
RHH5281_R3653
134.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.2
Schmiedel sample id
TPM
Classical monocyte TPM: 73.3
Samples: 91
Max TPM: 134.7
Min TPM: 53.1
MONOCYTES_1
134.7
MONOCYTES_2
102.1
MONOCYTES_3
96.8
MONOCYTES_4
95.4
MONOCYTES_5
94.8
MONOCYTES_6
93.1
MONOCYTES_7
92.4
MONOCYTES_8
91.7
MONOCYTES_9
91.4
MONOCYTES_10
89.0
MONOCYTES_11
88.7
MONOCYTES_12
88.0
MONOCYTES_13
87.6
MONOCYTES_14
86.9
MONOCYTES_15
86.5
MONOCYTES_16
86.4
MONOCYTES_17
85.9
MONOCYTES_18
85.9
MONOCYTES_19
85.4
MONOCYTES_20
85.3
MONOCYTES_21
83.5
MONOCYTES_22
82.8
MONOCYTES_23
82.5
MONOCYTES_24
82.3
MONOCYTES_25
81.4
MONOCYTES_26
81.0
MONOCYTES_27
80.2
MONOCYTES_28
80.0
MONOCYTES_29
79.8
MONOCYTES_30
78.8
MONOCYTES_31
78.3
MONOCYTES_32
77.8
MONOCYTES_33
77.0
MONOCYTES_34
75.1
MONOCYTES_35
74.5
MONOCYTES_36
73.8
MONOCYTES_37
73.6
MONOCYTES_38
73.5
MONOCYTES_39
73.1
MONOCYTES_40
72.4
MONOCYTES_41
72.2
MONOCYTES_42
71.6
MONOCYTES_43
71.3
MONOCYTES_44
71.0
MONOCYTES_45
70.8
MONOCYTES_46
70.5
MONOCYTES_47
69.9
MONOCYTES_48
69.8
MONOCYTES_49
69.2
MONOCYTES_50
69.2
MONOCYTES_51
69.1
MONOCYTES_52
68.8
MONOCYTES_53
68.6
MONOCYTES_54
68.0
MONOCYTES_55
67.3
MONOCYTES_56
67.3
MONOCYTES_57
67.0
MONOCYTES_58
66.7
MONOCYTES_59
66.7
MONOCYTES_60
66.3
MONOCYTES_61
66.0
MONOCYTES_62
65.6
MONOCYTES_63
65.5
MONOCYTES_64
65.0
MONOCYTES_65
64.6
MONOCYTES_66
63.9
MONOCYTES_67
63.2
MONOCYTES_68
63.0
MONOCYTES_69
63.0
MONOCYTES_70
62.5
MONOCYTES_71
62.0
MONOCYTES_72
62.0
MONOCYTES_73
61.9
MONOCYTES_74
61.7
MONOCYTES_75
61.6
MONOCYTES_76
61.6
MONOCYTES_77
61.3
MONOCYTES_78
61.3
MONOCYTES_79
61.0
MONOCYTES_80
60.8
MONOCYTES_81
59.8
MONOCYTES_82
58.9
MONOCYTES_83
58.6
MONOCYTES_84
58.4
MONOCYTES_85
57.8
MONOCYTES_86
57.6
MONOCYTES_87
56.0
MONOCYTES_88
55.0
MONOCYTES_89
53.9
MONOCYTES_90
53.5
MONOCYTES_91
53.1
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Non-classical monocyte TPM: 88.2
Samples: 90
Max TPM: 141.8
Min TPM: 62.7
M2_1
141.8
M2_2
126.2
M2_3
122.7
M2_4
120.9
M2_5
116.9
M2_6
116.7
M2_7
112.9
M2_8
110.9
M2_9
107.9
M2_10
107.6
M2_11
106.0
M2_12
105.5
M2_13
103.3
M2_14
102.3
M2_15
100.9
M2_16
100.2
M2_17
99.7
M2_18
98.3
M2_19
97.9
M2_20
97.7
M2_21
95.6
M2_22
95.4
M2_23
95.1
M2_24
94.8
M2_25
94.4
M2_26
94.3
M2_27
94.3
M2_28
93.6
M2_29
93.4
M2_30
93.3
M2_31
92.8
M2_32
91.9
M2_33
91.7
M2_34
90.9
M2_35
90.7
M2_36
90.4
M2_37
89.9
M2_38
89.3
M2_39
88.1
M2_40
87.3
M2_41
87.2
M2_42
86.8
M2_43
86.7
M2_44
86.7
M2_45
85.6
M2_46
85.1
M2_47
84.7
M2_48
84.7
M2_49
84.3
M2_50
84.2
M2_51
83.9
M2_52
83.9
M2_53
83.8
M2_54
83.7
M2_55
82.6
M2_56
82.0
M2_57
82.0
M2_58
81.2
M2_59
80.7
M2_60
80.7
M2_61
80.5
M2_62
79.9
M2_63
79.9
M2_64
78.8
M2_65
78.8
M2_66
78.5
M2_67
78.4
M2_68
77.4
M2_69
77.1
M2_70
76.9
M2_71
76.8
M2_72
75.4
M2_73
75.2
M2_74
74.9
M2_75
74.9
M2_76
74.6
M2_77
73.8
M2_78
73.7
M2_79
72.6
M2_80
71.9
M2_81
71.5
M2_82
71.1
M2_83
70.7
M2_84
70.0
M2_85
68.9
M2_86
68.3
M2_87
68.0
M2_88
67.5
M2_89
67.2
M2_90
62.7
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