A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
166.0
nTPM
Schmiedel:
148.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
NK-cell nTPM: 7.2
Samples: 6
Max nTPM: 15.2
Min nTPM: 2.9
P10809_1013
6.9
P10809_1033
7.7
P10809_1052
7.6
P10809_1071
2.9
P10809_1093
15.2
P10809_1103
2.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.0
Monaco sample
nTPM
NK-cell nTPM: 166.0
Samples: 4
Max nTPM: 174.5
Min nTPM: 156.5
RHH5316_R3683
156.5
RHH5224_R3596
170.8
RHH5253_R3625
174.5
RHH5282_R3654
162.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.8
Schmiedel sample id
TPM
NK-cell TPM: 148.8
Samples: 90
Max TPM: 199.9
Min TPM: 108.9
NK_1
199.9
NK_2
195.8
NK_3
195.1
NK_4
191.3
NK_5
190.8
NK_6
190.4
NK_7
190.0
NK_8
182.9
NK_9
176.6
NK_10
174.4
NK_11
173.8
NK_12
172.7
NK_13
171.4
NK_14
170.4
NK_15
169.2
NK_16
168.8
NK_17
166.2
NK_18
165.5
NK_19
165.0
NK_20
165.0
NK_21
164.9
NK_22
162.8
NK_23
162.5
NK_24
160.6
NK_25
159.6
NK_26
159.6
NK_27
159.5
NK_28
159.4
NK_29
159.3
NK_30
157.3
NK_31
157.3
NK_32
157.0
NK_33
156.1
NK_34
155.9
NK_35
155.6
NK_36
155.4
NK_37
155.4
NK_38
155.1
NK_39
154.6
NK_40
154.4
NK_41
154.2
NK_42
152.4
NK_43
150.9
NK_44
150.7
NK_45
148.7
NK_46
148.6
NK_47
148.4
NK_48
146.6
NK_49
146.0
NK_50
145.8
NK_51
145.7
NK_52
145.5
NK_53
144.9
NK_54
143.8
NK_55
143.2
NK_56
142.1
NK_57
141.1
NK_58
139.7
NK_59
139.0
NK_60
138.7
NK_61
138.0
NK_62
137.7
NK_63
137.2
NK_64
136.1
NK_65
135.6
NK_66
130.1
NK_67
129.6
NK_68
128.7
NK_69
128.1
NK_70
127.9
NK_71
127.4
NK_72
126.5
NK_73
126.4
NK_74
125.7
NK_75
124.6
NK_76
123.8
NK_77
123.6
NK_78
123.5
NK_79
123.2
NK_80
121.8
NK_81
121.2
NK_82
120.1
NK_83
120.0
NK_84
119.3
NK_85
117.3
NK_86
117.1
NK_87
115.3
NK_88
114.2
NK_89
110.3
NK_90
108.9
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