A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.4
nTPM
Monaco:
102.2
nTPM
Schmiedel:
54.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.4
HPA sample
nTPM
Memory B-cell nTPM: 30.4
Samples: 6
Max nTPM: 44.4
Min nTPM: 24.0
P10809_1017
29.7
P10809_1025
33.1
P10809_1044
44.4
P10809_1063
26.9
P10809_1092
24.0
P10809_1105
24.3
Naive B-cell nTPM: 26.7
Samples: 6
Max nTPM: 61.4
Min nTPM: 16.3
P10809_1011
19.0
P10809_1029
16.3
P10809_1048
61.4
P10809_1067
20.5
P10809_1091
25.4
P10809_1104
17.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 96.8
Samples: 4
Max nTPM: 107.9
Min nTPM: 89.1
RHH5310_R3677
89.1
RHH5218_R3590
98.7
RHH5247_R3619
91.6
RHH5276_R3648
107.9
Naive B-cell nTPM: 91.1
Samples: 4
Max nTPM: 116.7
Min nTPM: 80.5
RHH5308_R3675
80.5
RHH5216_R3588
81.7
RHH5245_R3617
116.7
RHH5274_R3646
85.6
Non-switched memory B-cell nTPM: 101.4
Samples: 4
Max nTPM: 114.6
Min nTPM: 86.1
RHH5309_R3676
86.1
RHH5217_R3589
114.6
RHH5246_R3618
110.2
RHH5275_R3647
94.7
Plasmablast nTPM: 81.5
Samples: 4
Max nTPM: 102.0
Min nTPM: 57.9
RHH5312_R3679
83.0
RHH5220_R3592
57.9
RHH5249_R3621
83.0
RHH5278_R3650
102.0
Switched memory B-cell nTPM: 102.2
Samples: 4
Max nTPM: 130.0
Min nTPM: 74.5
RHH5311_R3678
89.7
RHH5219_R3591
74.5
RHH5248_R3620
130.0
RHH5277_R3649
114.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.9
Schmiedel sample id
TPM
Naive B-cell TPM: 54.9
Samples: 91
Max TPM: 82.1
Min TPM: 33.9
B_CELL_NAIVE_1
82.1
B_CELL_NAIVE_2
76.2
B_CELL_NAIVE_3
73.7
B_CELL_NAIVE_4
73.1
B_CELL_NAIVE_5
71.0
B_CELL_NAIVE_6
70.1
B_CELL_NAIVE_7
69.7
B_CELL_NAIVE_8
69.3
B_CELL_NAIVE_9
68.9
B_CELL_NAIVE_10
68.7
B_CELL_NAIVE_11
68.2
B_CELL_NAIVE_12
66.4
B_CELL_NAIVE_13
65.4
B_CELL_NAIVE_14
65.4
B_CELL_NAIVE_15
65.2
B_CELL_NAIVE_16
65.1
B_CELL_NAIVE_17
64.9
B_CELL_NAIVE_18
64.6
B_CELL_NAIVE_19
64.0
B_CELL_NAIVE_20
62.0
B_CELL_NAIVE_21
61.7
B_CELL_NAIVE_22
60.9
B_CELL_NAIVE_23
60.4
B_CELL_NAIVE_24
60.2
B_CELL_NAIVE_25
59.9
B_CELL_NAIVE_26
59.5
B_CELL_NAIVE_27
59.5
B_CELL_NAIVE_28
59.2
B_CELL_NAIVE_29
58.8
B_CELL_NAIVE_30
58.7
B_CELL_NAIVE_31
58.7
B_CELL_NAIVE_32
58.6
B_CELL_NAIVE_33
58.4
B_CELL_NAIVE_34
58.4
B_CELL_NAIVE_35
57.9
B_CELL_NAIVE_36
57.8
B_CELL_NAIVE_37
57.7
B_CELL_NAIVE_38
57.6
B_CELL_NAIVE_39
57.1
B_CELL_NAIVE_40
57.1
B_CELL_NAIVE_41
57.0
B_CELL_NAIVE_42
56.5
B_CELL_NAIVE_43
56.4
B_CELL_NAIVE_44
55.4
B_CELL_NAIVE_45
55.4
B_CELL_NAIVE_46
55.1
B_CELL_NAIVE_47
55.1
B_CELL_NAIVE_48
54.6
B_CELL_NAIVE_49
54.5
B_CELL_NAIVE_50
53.7
B_CELL_NAIVE_51
53.5
B_CELL_NAIVE_52
53.3
B_CELL_NAIVE_53
52.9
B_CELL_NAIVE_54
52.5
B_CELL_NAIVE_55
52.2
B_CELL_NAIVE_56
52.0
B_CELL_NAIVE_57
51.5
B_CELL_NAIVE_58
51.4
B_CELL_NAIVE_59
51.0
B_CELL_NAIVE_60
50.7
B_CELL_NAIVE_61
50.7
B_CELL_NAIVE_62
50.7
B_CELL_NAIVE_63
50.6
B_CELL_NAIVE_64
50.2
B_CELL_NAIVE_65
49.4
B_CELL_NAIVE_66
48.8
B_CELL_NAIVE_67
48.8
B_CELL_NAIVE_68
48.4
B_CELL_NAIVE_69
48.1
B_CELL_NAIVE_70
47.4
B_CELL_NAIVE_71
47.2
B_CELL_NAIVE_72
46.8
B_CELL_NAIVE_73
46.6
B_CELL_NAIVE_74
46.6
B_CELL_NAIVE_75
45.9
B_CELL_NAIVE_76
45.0
B_CELL_NAIVE_77
44.1
B_CELL_NAIVE_78
43.6
B_CELL_NAIVE_79
42.8
B_CELL_NAIVE_80
42.4
B_CELL_NAIVE_81
42.3
B_CELL_NAIVE_82
41.2
B_CELL_NAIVE_83
41.1
B_CELL_NAIVE_84
40.7
B_CELL_NAIVE_85
40.6
B_CELL_NAIVE_86
40.6
B_CELL_NAIVE_87
37.7
B_CELL_NAIVE_88
36.7
B_CELL_NAIVE_89
35.1
B_CELL_NAIVE_90
33.9
B_CELL_NAIVE_91
33.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
