A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.4
nTPM
Monaco:
128.7
nTPM
Schmiedel:
68.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.4
HPA sample
nTPM
Classical monocyte nTPM: 18.7
Samples: 6
Max nTPM: 21.7
Min nTPM: 14.5
P10809_1003
20.6
P10809_1020
18.6
P10809_1039
17.4
P10809_1058
19.2
P10809_1080
21.7
P10809_1107
14.5
Intermediate monocyte nTPM: 32.4
Samples: 6
Max nTPM: 44.7
Min nTPM: 24.5
P10809_1004
35.6
P10809_1023
27.4
P10809_1042
32.0
P10809_1061
44.7
P10809_1081
30.1
P10809_1108
24.5
Non-classical monocyte nTPM: 31.2
Samples: 5
Max nTPM: 38.6
Min nTPM: 23.8
P10809_1005
38.6
P10809_1053
35.8
P10809_1072
23.8
P10809_1082
32.3
P10809_1109
25.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.7
Monaco sample
nTPM
Classical monocyte nTPM: 74.4
Samples: 4
Max nTPM: 88.8
Min nTPM: 67.5
RHH5313_R3680
68.3
RHH5221_R3593
73.1
RHH5250_R3622
88.8
RHH5279_R3651
67.5
Intermediate monocyte nTPM: 98.0
Samples: 4
Max nTPM: 126.9
Min nTPM: 83.1
RHH5314_R3681
85.9
RHH5222_R3594
126.9
RHH5251_R3623
83.1
RHH5280_R3652
96.1
Non-classical monocyte nTPM: 128.7
Samples: 4
Max nTPM: 136.2
Min nTPM: 118.1
RHH5315_R3682
118.1
RHH5223_R3595
136.2
RHH5252_R3624
125.0
RHH5281_R3653
135.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.9
Schmiedel sample id
TPM
Classical monocyte TPM: 31.6
Samples: 91
Max TPM: 45.9
Min TPM: 19.0
MONOCYTES_1
45.9
MONOCYTES_2
44.3
MONOCYTES_3
43.4
MONOCYTES_4
41.8
MONOCYTES_5
41.4
MONOCYTES_6
40.9
MONOCYTES_7
40.0
MONOCYTES_8
38.0
MONOCYTES_9
37.8
MONOCYTES_10
37.7
MONOCYTES_11
37.6
MONOCYTES_12
37.3
MONOCYTES_13
36.4
MONOCYTES_14
36.4
MONOCYTES_15
36.1
MONOCYTES_16
35.8
MONOCYTES_17
35.8
MONOCYTES_18
35.7
MONOCYTES_19
35.4
MONOCYTES_20
35.3
MONOCYTES_21
34.7
MONOCYTES_22
34.6
MONOCYTES_23
34.4
MONOCYTES_24
34.3
MONOCYTES_25
34.3
MONOCYTES_26
34.2
MONOCYTES_27
34.0
MONOCYTES_28
33.8
MONOCYTES_29
33.7
MONOCYTES_30
33.5
MONOCYTES_31
33.2
MONOCYTES_32
33.2
MONOCYTES_33
32.9
MONOCYTES_34
32.9
MONOCYTES_35
32.8
MONOCYTES_36
32.7
MONOCYTES_37
32.7
MONOCYTES_38
32.6
MONOCYTES_39
32.5
MONOCYTES_40
32.4
MONOCYTES_41
32.3
MONOCYTES_42
31.9
MONOCYTES_43
31.8
MONOCYTES_44
31.7
MONOCYTES_45
31.5
MONOCYTES_46
31.4
MONOCYTES_47
31.4
MONOCYTES_48
31.3
MONOCYTES_49
31.0
MONOCYTES_50
31.0
MONOCYTES_51
30.8
MONOCYTES_52
30.7
MONOCYTES_53
30.5
MONOCYTES_54
30.5
MONOCYTES_55
30.5
MONOCYTES_56
30.4
MONOCYTES_57
30.4
MONOCYTES_58
30.3
MONOCYTES_59
30.2
MONOCYTES_60
30.1
MONOCYTES_61
30.1
MONOCYTES_62
29.9
MONOCYTES_63
29.9
MONOCYTES_64
29.8
MONOCYTES_65
29.7
MONOCYTES_66
29.7
MONOCYTES_67
29.5
MONOCYTES_68
29.3
MONOCYTES_69
29.1
MONOCYTES_70
28.9
MONOCYTES_71
28.7
MONOCYTES_72
28.5
MONOCYTES_73
28.1
MONOCYTES_74
27.8
MONOCYTES_75
27.2
MONOCYTES_76
26.9
MONOCYTES_77
26.6
MONOCYTES_78
26.5
MONOCYTES_79
26.2
MONOCYTES_80
25.5
MONOCYTES_81
25.2
MONOCYTES_82
24.6
MONOCYTES_83
24.2
MONOCYTES_84
23.5
MONOCYTES_85
23.4
MONOCYTES_86
23.3
MONOCYTES_87
22.9
MONOCYTES_88
21.8
MONOCYTES_89
21.2
MONOCYTES_90
19.9
MONOCYTES_91
19.0
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Non-classical monocyte TPM: 68.9
Samples: 90
Max TPM: 101.9
Min TPM: 42.9
M2_1
101.9
M2_2
97.1
M2_3
94.1
M2_4
93.0
M2_5
91.5
M2_6
90.3
M2_7
89.3
M2_8
86.9
M2_9
82.0
M2_10
81.4
M2_11
81.4
M2_12
80.5
M2_13
80.4
M2_14
80.2
M2_15
80.2
M2_16
79.6
M2_17
77.9
M2_18
77.6
M2_19
77.3
M2_20
77.1
M2_21
77.0
M2_22
76.3
M2_23
76.0
M2_24
75.6
M2_25
75.6
M2_26
75.5
M2_27
75.5
M2_28
75.4
M2_29
74.7
M2_30
74.3
M2_31
73.2
M2_32
73.0
M2_33
72.4
M2_34
72.3
M2_35
72.2
M2_36
71.5
M2_37
71.5
M2_38
71.3
M2_39
71.0
M2_40
70.6
M2_41
69.8
M2_42
69.5
M2_43
69.4
M2_44
69.1
M2_45
68.7
M2_46
68.3
M2_47
67.9
M2_48
67.5
M2_49
67.5
M2_50
67.4
M2_51
66.7
M2_52
66.6
M2_53
66.0
M2_54
66.0
M2_55
66.0
M2_56
65.6
M2_57
65.3
M2_58
64.6
M2_59
64.2
M2_60
63.2
M2_61
63.1
M2_62
62.9
M2_63
62.8
M2_64
62.6
M2_65
62.6
M2_66
62.1
M2_67
61.8
M2_68
61.1
M2_69
60.2
M2_70
59.7
M2_71
58.9
M2_72
58.6
M2_73
58.5
M2_74
58.4
M2_75
57.7
M2_76
57.7
M2_77
57.3
M2_78
57.2
M2_79
56.8
M2_80
56.7
M2_81
55.9
M2_82
55.2
M2_83
53.6
M2_84
52.3
M2_85
50.6
M2_86
48.1
M2_87
46.5
M2_88
45.9
M2_89
43.5
M2_90
42.9
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