A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.1
nTPM
Monaco:
142.2
nTPM
Schmiedel:
84.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
HPA sample
nTPM
NK-cell nTPM: 37.1
Samples: 6
Max nTPM: 66.2
Min nTPM: 24.0
P10809_1013
31.6
P10809_1033
32.6
P10809_1052
33.5
P10809_1071
34.5
P10809_1093
66.2
P10809_1103
24.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.2
Monaco sample
nTPM
NK-cell nTPM: 142.1
Samples: 4
Max nTPM: 169.2
Min nTPM: 114.6
RHH5316_R3683
114.6
RHH5224_R3596
169.2
RHH5253_R3625
160.2
RHH5282_R3654
124.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.7
Schmiedel sample id
TPM
NK-cell TPM: 84.7
Samples: 90
Max TPM: 142.1
Min TPM: 45.9
NK_1
142.1
NK_2
136.3
NK_3
119.1
NK_4
116.1
NK_5
115.4
NK_6
114.9
NK_7
114.5
NK_8
113.7
NK_9
113.0
NK_10
110.0
NK_11
109.5
NK_12
108.1
NK_13
104.1
NK_14
103.3
NK_15
103.0
NK_16
101.2
NK_17
100.3
NK_18
99.6
NK_19
98.8
NK_20
96.9
NK_21
96.6
NK_22
94.8
NK_23
94.3
NK_24
94.0
NK_25
93.3
NK_26
92.8
NK_27
91.9
NK_28
91.9
NK_29
91.7
NK_30
90.9
NK_31
90.6
NK_32
89.8
NK_33
89.1
NK_34
88.9
NK_35
88.1
NK_36
87.7
NK_37
86.9
NK_38
86.7
NK_39
86.6
NK_40
86.5
NK_41
86.4
NK_42
85.9
NK_43
85.6
NK_44
85.2
NK_45
83.4
NK_46
83.4
NK_47
83.1
NK_48
83.1
NK_49
82.1
NK_50
81.8
NK_51
81.4
NK_52
80.2
NK_53
79.9
NK_54
79.7
NK_55
79.3
NK_56
79.2
NK_57
79.0
NK_58
79.0
NK_59
78.7
NK_60
77.5
NK_61
77.0
NK_62
76.6
NK_63
76.3
NK_64
73.9
NK_65
72.7
NK_66
72.7
NK_67
72.4
NK_68
71.9
NK_69
71.8
NK_70
71.1
NK_71
71.0
NK_72
70.5
NK_73
69.8
NK_74
69.5
NK_75
68.6
NK_76
67.9
NK_77
64.9
NK_78
64.5
NK_79
64.2
NK_80
63.4
NK_81
62.2
NK_82
59.1
NK_83
56.9
NK_84
56.4
NK_85
55.4
NK_86
54.9
NK_87
53.1
NK_88
51.5
NK_89
47.2
NK_90
45.9
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