We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ARHGAP44
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ARHGAP44
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:13.3 nTPM
HPA Brain:80.9 nTPM
GTEx:13.3 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:81.2 nTPM
Mouse:71.9 nTPM
Allen mouse:13.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.9
Sample id Sample description nTPM
Amygdala
nTPM: 52.9
2814 Male, age 76, right hemisphere 96.9
2517 Female, age 94, left hemisphere 56.2
1987 Female, age 91, left hemisphere 46.2
2514 Male, age 75, right hemisphere 33.2
2695 Female, age 67, right hemisphere 32.0
Basal amygdala
nTPM: 80.9
2243 Female, age 91, right hemisphere 142.9
2685 Female, age 94, left hemisphere 90.9
1955 Male, age 76, both hemispheres 75.3
2110 Male, age 80, left hemisphere 64.8
2827 Female, age 67, right hemisphere 61.5
2609 Male, age 75, right hemisphere 50.0
Central amygdala
nTPM: 64.5
1905 Male, age 76, both hemispheres 92.3
2239 Male, age 80, left hemisphere 73.8
2826 Female, age 94, left hemisphere 67.4
2701 Female, age 91, right hemisphere 52.1
2515 Male, age 75, right hemisphere 37.0
Corticomedial amygdala
nTPM: 80.2
2242 Female, age 91, right hemisphere 133.1
2829 Male, age 80, left hemisphere 92.6
2535 Female, age 67, right hemisphere 75.6
2240 Male, age 76, both hemispheres 71.3
2429 Female, age 94, left hemisphere 66.3
2428 Male, age 75, right hemisphere 42.2
Lateral amygdala
nTPM: 55.3
1883 Male, age 76, both hemispheres 96.4
2534 Female, age 94, left hemisphere 70.2
2255 Female, age 91, right hemisphere 54.7
2256 Male, age 80, left hemisphere 46.9
2830 Female, age 67, right hemisphere 33.3
2516 Male, age 75, right hemisphere 30.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 13.3
Samples: 152

Max nTPM: 36.7
Min nTPM: 1.6
Std nTPM: 7.4
Median nTPM: 12.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 36.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 33.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 31.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 30.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 28.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 28.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 27.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 27.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 26.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 26.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 25.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 24.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 24.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 24.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 23.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 23.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 23.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 23.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 22.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 21.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 21.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 20.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 20.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 20.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 20.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 19.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 19.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 19.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 19.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 19.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 19.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 19.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 19.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 19.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 19.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 19.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 18.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 18.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 18.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 18.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 18.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 18.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 17.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 17.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 17.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 16.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 16.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 16.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 16.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 16.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 15.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 15.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 15.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 15.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 14.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 14.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 14.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 14.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 13.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 13.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 13.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 13.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 13.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 13.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 13.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 13.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 12.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 12.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 12.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 12.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 12.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 12.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 11.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 11.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 11.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 11.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 11.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 11.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 11.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 11.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 10.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 10.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 10.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 10.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 10.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 10.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 10.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 10.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 9.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 9.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 9.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 9.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 9.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 9.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 8.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 8.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 8.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 8.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 7.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 7.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 7.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 7.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 7.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 6.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 6.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 6.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 5.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 5.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 5.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 5.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 4.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 4.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 3.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 3.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 51.0
FF:10151-102I7 76 years, female 51.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.2
Pig sample Sample description nTPM
Amygdala
nTPM: 81.2
Samples: 4

Max nTPM: 90.2
Min nTPM: 67.0
Sample A Female 90.2
Sample B Female 67.0
Sample C Male 86.6
Sample D Male 80.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 72.0
Samples: 4

Max nTPM: 76.3
Min nTPM: 69.0
Sample A Male 73.1
Sample B Male 69.0
Sample C Female 76.3
Sample D Female 69.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.9
70231074 Antisense, RP_050526_01_B06, Mouse strain C57BL/6J (56 days, male) 13.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org