MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA Brain:55.5 nTPM
GTEx:5.9 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:62.8 nTPM
Allen mouse:9.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
2019 Male, age 18, unknown 59.4
2219 Male, age 76, both hemispheres 53.5
2666 Male, age 74, left hemisphere 52.1
1827 Male, age 72, unknown 41.6
2828 Female, age 72, unknown 41.5
2586 Male, age 75, left hemisphere 38.6
2411 Female, age 72, unknown 29.5
1833 Male, age 53, unknown 29.4
1870 Female, age 42, unknown 29.4
1830 Male, age 51, unknown 28.1
Dorsal raphe nucleus
nTPM: 25.8
2298 Female, age 72, unknown 30.2
1828 Male, age 53, unknown 29.6
2750 Male, age 76, both hemispheres 26.6
2047 Male, age 72, unknown 23.5
2016 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 37.7
2097 Female, age 72, unknown 41.3
2849 Male, age 72, unknown 39.9
1848 Female, age 42, unknown 38.5
1890 Male, age 53, unknown 31.2
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Periaquaductal grey, anterior
nTPM: 40.4
1795 Male, age 51, unknown 47.0
2502 Female, age 75, unknown 39.1
1947 Male, age 18, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 30.5
2464 Female, age 72, unknown 34.6
1831 Male, age 72, unknown 31.5
1840 Male, age 53, unknown 28.8
2850 Male, age 76, both hemispheres 27.1
Periaquaductal grey, lateral
nTPM: 26.5
2053 Male, age 18, unknown 29.6
2140 Male, age 76, both hemispheres 29.3
2272 Male, age 74, both hemispheres 20.7
Pretectal area
nTPM: 55.5
1816 Male, age 51, unknown 90.3
1944 Female, age 72, unknown 88.3
1817 Female, age 42, unknown 88.0
2007 Male, age 72, unknown 77.8
1815 Male, age 53, unknown 70.5
2667 Female, age 75, unknown 56.1
2316 Male, age 76, right hemisphere 33.4
2224 Female, age 72, unknown 32.6
2407 Male, age 75, both hemispheres 28.5
2825 Male, age 18, unknown 28.3
2273 Male, age 74, both hemispheres 16.5
Red nucleus
nTPM: 37.1
2785 Male, age 18, unknown 59.0
2584 Male, age 75, left hemisphere 42.0
2823 Male, age 76, right hemisphere 40.7
1821 Female, age 72, unknown 39.8
2588 Male, age 74, left hemisphere 38.5
1954 Female, age 42, unknown 37.4
1865 Male, age 51, unknown 35.3
2769 Male, age 72, unknown 34.9
2227 Male, age 72, unknown 34.4
2503 Female, age 72, unknown 34.3
1904 Male, age 53, unknown 32.1
2725 Female, age 75, unknown 17.0
Substantia nigra
nTPM: 38.6
1889 Female, age 72, unknown 63.2
2665 Male, age 74, both hemispheres 55.7
1941 Male, age 53, unknown 51.4
1916 Female, age 42, unknown 49.2
2583 Male, age 75, right hemisphere 33.5
1851 Male, age 51, unknown 33.2
2241 Male, age 72, unknown 29.2
2590 Female, age 75, unknown 28.7
2699 Male, age 18, unknown 23.1
2409 Female, age 72, unknown 18.5
Superior colliculus
nTPM: 50.1
2668 Female, age 75, unknown 106.9
2087 Female, age 72, unknown 74.3
1895 Male, age 76, right hemisphere 49.8
2261 Male, age 18, unknown 49.1
1796 Male, age 53, unknown 41.2
1913 Female, age 42, unknown 38.1
1839 Male, age 51, unknown 37.5
2664 Male, age 75, both hemispheres 37.5
1995 Male, age 72, unknown 34.9
2587 Male, age 74, left hemisphere 31.6
Ventral tegmental area
nTPM: 32.4
2218 Male, age 76, both hemispheres 39.9
2410 Female, age 72, unknown 39.9
1915 Female, age 42, unknown 36.5
2021 Male, age 53, unknown 27.6
1942 Male, age 51, unknown 27.1
2223 Female, age 72, unknown 23.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.9
Samples: 139

Max nTPM: 33.9
Min nTPM: 0.6
Std nTPM: 5.1
Median nTPM: 3.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 25.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 14.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 13.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.1
Samples: 4

Max nTPM: 46.0
Min nTPM: 23.6
Sample A Female 45.8
Sample B Female 28.9
Sample C Male 46.0
Sample D Male 23.6
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 88.0
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 33.6
Sample C Male 88.0
Sample D Male 60.7
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 36.0
Min nTPM: 27.0
Sample B Female 36.0
Sample C Male 33.4
Sample D Male 27.0
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 67.0
Min nTPM: 31.8
Sample A Female 50.1
Sample B Female 31.8
Sample C Male 67.0
Sample D Male 59.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 64.3
Min nTPM: 61.3
Sample A Male 61.8
Sample B Male 61.3
Sample C Female 64.3
Sample D Female 63.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.5
70231074 Antisense, RP_050526_01_B06, Mouse strain C57BL/6J (56 days, male) 9.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org