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CCDC124
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  • CCDC124
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:124.1 nTPM
HPA Brain:77.7 nTPM
GTEx:124.1 nTPM
FANTOM5:33.7 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:66.2 nTPM
Allen mouse:6.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.7
Sample id Sample description nTPM
Amygdala
nTPM: 76.1
2695 Female, age 67, right hemisphere 88.7
2814 Male, age 76, right hemisphere 86.2
2517 Female, age 94, left hemisphere 70.0
2514 Male, age 75, right hemisphere 68.6
1987 Female, age 91, left hemisphere 66.9
Basal amygdala
nTPM: 75.0
2609 Male, age 75, right hemisphere 86.0
2243 Female, age 91, right hemisphere 76.2
1955 Male, age 76, both hemispheres 76.1
2685 Female, age 94, left hemisphere 73.6
2827 Female, age 67, right hemisphere 71.6
2110 Male, age 80, left hemisphere 66.3
Central amygdala
nTPM: 77.7
2826 Female, age 94, left hemisphere 92.7
1905 Male, age 76, both hemispheres 77.0
2239 Male, age 80, left hemisphere 76.0
2515 Male, age 75, right hemisphere 71.5
2701 Female, age 91, right hemisphere 71.5
Corticomedial amygdala
nTPM: 65.1
2535 Female, age 67, right hemisphere 71.4
2829 Male, age 80, left hemisphere 68.9
2428 Male, age 75, right hemisphere 66.9
2240 Male, age 76, both hemispheres 63.3
2242 Female, age 91, right hemisphere 61.1
2429 Female, age 94, left hemisphere 59.3
Lateral amygdala
nTPM: 74.3
2534 Female, age 94, left hemisphere 83.3
1883 Male, age 76, both hemispheres 79.5
2516 Male, age 75, right hemisphere 74.5
2830 Female, age 67, right hemisphere 73.8
2255 Female, age 91, right hemisphere 67.6
2256 Male, age 80, left hemisphere 67.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.1
Samples: 181

Max nTPM: 344.2
Min nTPM: 59.6
Std nTPM: 36.1
Median nTPM: 120.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 344.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 272.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 248.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 235.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 232.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 221.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 201.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 177.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 176.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 175.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 169.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 168.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 166.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 166.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 164.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 163.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 160.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 159.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 158.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 156.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 153.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 151.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 150.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 150.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 148.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 147.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 144.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 143.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 142.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 141.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 141.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 141.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 141.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 140.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 140.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 139.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 139.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 139.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 138.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 137.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 137.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 137.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 137.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 135.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 134.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 134.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 133.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 132.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 132.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 132.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 131.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 131.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 129.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 128.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 128.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 128.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 127.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 127.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 126.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 126.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 125.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 124.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 123.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 123.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 123.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 122.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 122.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 122.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 121.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 121.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 120.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 120.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 120.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 119.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 119.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 116.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 115.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 115.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 114.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 113.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 113.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 112.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 112.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 112.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 111.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 111.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 111.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 110.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 110.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 109.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 108.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 108.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 106.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 104.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 104.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 104.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 103.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 102.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 101.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 101.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 101.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 101.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 99.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 98.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 97.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 97.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 96.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 96.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 96.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 95.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 95.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 94.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 94.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 92.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 88.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 86.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 84.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 84.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 83.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 81.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 80.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 78.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 75.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 33.7
FF:10151-102I7 76 years, female 33.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.5
Pig sample Sample description nTPM
Amygdala
nTPM: 12.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.8
Sample A Female 16.3
Sample B Female 11.3
Sample C Male 12.4
Sample D Male 9.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 66.2
Samples: 4

Max nTPM: 85.5
Min nTPM: 57.2
Sample A Male 60.7
Sample B Male 61.3
Sample C Female 85.5
Sample D Female 57.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.9
69174040 Antisense, RP_050329_01_H12, Mouse strain C57BL/6J (56 days, male) 6.9

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