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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
High
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA030775
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB034143
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 63.9
Samples: 105
Max nTPM: 117.7
Min nTPM: 19.7
Std nTPM: 14.7
Median nTPM:
452_1
88 years, female
117.7
413_1
59 years, female
95.7
379_1
60 years, male
92.6
163_1
78 years, male
92.3
353_1
82 years, female
90.8
501_1
88 years, male
87.3
506_1
65 years, male
86.2
243_1
75 years, male
85.1
295_1
61 years, female
84.4
99_1
64 years, male
82.1
288_1
66 years, female
82.1
377_1
82 years, female
80.5
386_1
76 years, male
79.4
18_1
88 years, male
78.7
109_1
81 years, female
78.0
321_1
62 years, female
77.5
264_1
73 years, female
77.1
394_1
75 years, female
77.1
349_1
83 years, male
76.9
376_1
75 years, female
76.4
177_1
74 years, male
76.2
348_1
84 years, male
75.9
318_1
68 years, male
75.4
335_1
73 years, female
74.5
32_1
67 years, male
73.4
320_1
89 years, female
73.2
189_1
76 years, male
72.4
149_1
88 years, male
72.3
291_1
76 years, male
71.7
404_1
82 years, female
71.3
517_1
88 years, male
71.2
4_1
88 years, female
70.0
41_1
94 years, female
69.8
314_1
67 years, male
69.4
229_1
69 years, female
69.0
396_1
62 years, male
68.3
173_1
67 years, male
67.8
406_1
79 years, male
67.3
313_1
79 years, female
67.0
265_1
87 years, male
66.8
153_1
70 years, female
66.6
162_1
79 years, female
66.4
405_1
91 years, male
66.4
292_1
71 years, male
65.9
251_1
78 years, male
65.6
115_1
83 years, male
65.1
356_1
87 years, female
65.0
81_1
67 years, male
64.6
375_1
74 years, female
64.2
254_1
77 years, female
64.0
120_1
70 years, female
63.9
139_1
64 years, female
63.7
286_1
68 years, female
63.4
17_1
71 years, male
62.8
322_1
76 years, male
62.8
351_1
91 years, male
62.5
172_1
72 years, female
62.2
350_1
84 years, female
61.5
324_1
76 years, male
61.4
89_1
63 years, male
61.3
414_1
84 years, female
60.8
117_1
61 years, male
60.0
142_1
61 years, female
59.6
518_1
75 years, female
59.5
355_1
70 years, female
58.5
315_1
62 years, female
58.0
466_1
57 years, female
58.0
126_1
63 years, male
57.9
526_1
61 years, male
57.8
491_1
89 years, female
57.5
266_1
85 years, male
57.3
319_1
81 years, male
57.0
119_1
70 years, female
56.4
145_1
84 years, male
56.3
311_1
78 years, male
55.8
415_1
77 years, female
55.8
217_1
76 years, male
55.5
354_1
81 years, female
55.4
447_1
81 years, male
55.4
352_1
62 years, male
55.3
42_1
85 years, male
54.9
389_1
86 years, female
54.5
6_1
73 years, female
54.0
425_1
59 years, female
54.0
137_1
83 years, male
53.8
246_1
77 years, male
53.7
293_1
68 years, female
53.5
347_1
72 years, male
53.2
43_1
64 years, female
53.1
237_1
82 years, male
51.5
317_1
60 years, male
51.0
480_1
63 years, male
50.6
499_1
55 years, female
50.0
503_1
68 years, male
49.5
2_1
77 years, female
48.5
316_1
62 years, male
47.0
35_1
74 years, female
46.8
384_1
83 years, male
46.5
9_1
66 years, female
46.4
490_1
67 years, female
45.8
468_1
89 years, male
44.8
218_1
71 years, female
32.5
307_1
66 years, female
24.2
308_1
70 years, female
22.5
495_1
57 years, female
19.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
