A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.2
nTPM
Monaco:
39.4
nTPM
Schmiedel:
393.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
HPA sample
nTPM
Memory B-cell nTPM: 4.2
Samples: 6
Max nTPM: 18.0
Min nTPM: 0.9
P10809_1017
1.9
P10809_1025
0.9
P10809_1044
18.0
P10809_1063
1.6
P10809_1092
0.9
P10809_1105
1.9
Naive B-cell nTPM: 3.3
Samples: 6
Max nTPM: 4.7
Min nTPM: 2.5
P10809_1011
3.1
P10809_1029
4.7
P10809_1048
3.5
P10809_1067
3.0
P10809_1091
2.5
P10809_1104
3.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 32.8
Samples: 4
Max nTPM: 56.8
Min nTPM: 20.7
RHH5310_R3677
21.7
RHH5218_R3590
56.8
RHH5247_R3619
20.7
RHH5276_R3648
31.8
Naive B-cell nTPM: 39.4
Samples: 4
Max nTPM: 48.1
Min nTPM: 28.1
RHH5308_R3675
40.8
RHH5216_R3588
48.1
RHH5245_R3617
40.5
RHH5274_R3646
28.1
Non-switched memory B-cell nTPM: 30.7
Samples: 4
Max nTPM: 45.9
Min nTPM: 21.9
RHH5309_R3676
25.3
RHH5217_R3589
45.9
RHH5246_R3618
29.6
RHH5275_R3647
21.9
Plasmablast nTPM: 17.4
Samples: 4
Max nTPM: 28.6
Min nTPM: 8.4
RHH5312_R3679
15.5
RHH5220_R3592
28.6
RHH5249_R3621
17.2
RHH5278_R3650
8.4
Switched memory B-cell nTPM: 28.8
Samples: 4
Max nTPM: 40.3
Min nTPM: 20.7
RHH5311_R3678
24.0
RHH5219_R3591
40.3
RHH5248_R3620
30.3
RHH5277_R3649
20.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
393.4
Schmiedel sample id
TPM
Naive B-cell TPM: 393.4
Samples: 91
Max TPM: 627.5
Min TPM: 234.0
B_CELL_NAIVE_1
627.5
B_CELL_NAIVE_2
608.7
B_CELL_NAIVE_3
521.0
B_CELL_NAIVE_4
520.4
B_CELL_NAIVE_5
519.2
B_CELL_NAIVE_6
511.5
B_CELL_NAIVE_7
503.9
B_CELL_NAIVE_8
500.6
B_CELL_NAIVE_9
499.2
B_CELL_NAIVE_10
497.4
B_CELL_NAIVE_11
491.1
B_CELL_NAIVE_12
474.4
B_CELL_NAIVE_13
467.1
B_CELL_NAIVE_14
465.7
B_CELL_NAIVE_15
459.0
B_CELL_NAIVE_16
452.7
B_CELL_NAIVE_17
447.5
B_CELL_NAIVE_18
441.6
B_CELL_NAIVE_19
439.6
B_CELL_NAIVE_20
435.5
B_CELL_NAIVE_21
433.8
B_CELL_NAIVE_22
432.7
B_CELL_NAIVE_23
432.2
B_CELL_NAIVE_24
432.0
B_CELL_NAIVE_25
431.3
B_CELL_NAIVE_26
430.4
B_CELL_NAIVE_27
429.1
B_CELL_NAIVE_28
424.6
B_CELL_NAIVE_29
423.3
B_CELL_NAIVE_30
422.1
B_CELL_NAIVE_31
416.9
B_CELL_NAIVE_32
415.5
B_CELL_NAIVE_33
412.6
B_CELL_NAIVE_34
412.2
B_CELL_NAIVE_35
409.2
B_CELL_NAIVE_36
408.9
B_CELL_NAIVE_37
408.7
B_CELL_NAIVE_38
403.0
B_CELL_NAIVE_39
401.0
B_CELL_NAIVE_40
398.8
B_CELL_NAIVE_41
395.7
B_CELL_NAIVE_42
393.5
B_CELL_NAIVE_43
392.1
B_CELL_NAIVE_44
391.9
B_CELL_NAIVE_45
389.8
B_CELL_NAIVE_46
388.4
B_CELL_NAIVE_47
382.2
B_CELL_NAIVE_48
381.2
B_CELL_NAIVE_49
377.6
B_CELL_NAIVE_50
377.4
B_CELL_NAIVE_51
377.2
B_CELL_NAIVE_52
376.5
B_CELL_NAIVE_53
375.2
B_CELL_NAIVE_54
371.8
B_CELL_NAIVE_55
370.7
B_CELL_NAIVE_56
369.6
B_CELL_NAIVE_57
365.3
B_CELL_NAIVE_58
364.7
B_CELL_NAIVE_59
363.0
B_CELL_NAIVE_60
362.7
B_CELL_NAIVE_61
360.7
B_CELL_NAIVE_62
357.2
B_CELL_NAIVE_63
355.7
B_CELL_NAIVE_64
355.4
B_CELL_NAIVE_65
351.0
B_CELL_NAIVE_66
350.4
B_CELL_NAIVE_67
348.0
B_CELL_NAIVE_68
347.6
B_CELL_NAIVE_69
343.8
B_CELL_NAIVE_70
342.5
B_CELL_NAIVE_71
342.1
B_CELL_NAIVE_72
340.2
B_CELL_NAIVE_73
335.1
B_CELL_NAIVE_74
333.8
B_CELL_NAIVE_75
333.5
B_CELL_NAIVE_76
329.6
B_CELL_NAIVE_77
328.0
B_CELL_NAIVE_78
327.6
B_CELL_NAIVE_79
327.5
B_CELL_NAIVE_80
327.5
B_CELL_NAIVE_81
314.9
B_CELL_NAIVE_82
306.4
B_CELL_NAIVE_83
304.0
B_CELL_NAIVE_84
300.0
B_CELL_NAIVE_85
297.5
B_CELL_NAIVE_86
292.4
B_CELL_NAIVE_87
280.9
B_CELL_NAIVE_88
280.1
B_CELL_NAIVE_89
274.4
B_CELL_NAIVE_90
245.5
B_CELL_NAIVE_91
234.0
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