A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
36.2
nTPM
Schmiedel:
350.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
NK-cell nTPM: 2.7
Samples: 6
Max nTPM: 4.6
Min nTPM: 0.0
P10809_1013
3.3
P10809_1033
4.6
P10809_1052
3.2
P10809_1071
3.6
P10809_1093
0.0
P10809_1103
1.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.2
Monaco sample
nTPM
NK-cell nTPM: 36.2
Samples: 4
Max nTPM: 54.2
Min nTPM: 28.0
RHH5316_R3683
32.2
RHH5224_R3596
54.2
RHH5253_R3625
30.2
RHH5282_R3654
28.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
350.4
Schmiedel sample id
TPM
NK-cell TPM: 350.4
Samples: 90
Max TPM: 539.1
Min TPM: 236.7
NK_1
539.1
NK_2
533.0
NK_3
515.5
NK_4
485.6
NK_5
463.7
NK_6
462.9
NK_7
458.8
NK_8
458.8
NK_9
458.6
NK_10
455.2
NK_11
443.6
NK_12
436.0
NK_13
435.2
NK_14
425.5
NK_15
424.3
NK_16
419.6
NK_17
415.8
NK_18
409.4
NK_19
406.1
NK_20
404.5
NK_21
403.4
NK_22
393.3
NK_23
388.4
NK_24
387.1
NK_25
386.9
NK_26
385.7
NK_27
385.7
NK_28
381.9
NK_29
381.3
NK_30
377.8
NK_31
370.8
NK_32
368.4
NK_33
364.4
NK_34
359.8
NK_35
352.2
NK_36
351.9
NK_37
348.7
NK_38
348.3
NK_39
348.2
NK_40
346.8
NK_41
346.1
NK_42
345.9
NK_43
345.8
NK_44
343.0
NK_45
339.7
NK_46
339.5
NK_47
338.5
NK_48
336.7
NK_49
334.5
NK_50
333.7
NK_51
333.2
NK_52
331.4
NK_53
330.4
NK_54
329.9
NK_55
326.9
NK_56
323.3
NK_57
320.6
NK_58
319.3
NK_59
318.6
NK_60
318.0
NK_61
315.5
NK_62
315.5
NK_63
313.5
NK_64
308.9
NK_65
308.8
NK_66
300.9
NK_67
291.6
NK_68
290.6
NK_69
290.4
NK_70
289.3
NK_71
283.2
NK_72
283.1
NK_73
281.7
NK_74
281.2
NK_75
280.0
NK_76
277.1
NK_77
276.6
NK_78
275.7
NK_79
273.6
NK_80
272.1
NK_81
270.9
NK_82
269.9
NK_83
267.7
NK_84
262.0
NK_85
259.8
NK_86
259.2
NK_87
257.7
NK_88
253.9
NK_89
248.5
NK_90
236.7
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