A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
25.2
nTPM
Schmiedel:
148.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.8
P10809_1003
0.8
P10809_1020
1.3
P10809_1039
2.2
P10809_1058
1.5
P10809_1080
1.4
P10809_1107
1.9
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.8
Min nTPM: 0.9
P10809_1004
0.9
P10809_1023
3.8
P10809_1042
1.8
P10809_1061
1.3
P10809_1081
1.8
P10809_1108
1.5
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1005
1.2
P10809_1053
1.9
P10809_1072
0.0
P10809_1082
2.8
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Monaco sample
nTPM
Classical monocyte nTPM: 25.2
Samples: 4
Max nTPM: 40.0
Min nTPM: 13.7
RHH5313_R3680
21.0
RHH5221_R3593
40.0
RHH5250_R3622
13.7
RHH5279_R3651
26.1
Intermediate monocyte nTPM: 22.8
Samples: 4
Max nTPM: 30.7
Min nTPM: 16.9
RHH5314_R3681
16.9
RHH5222_R3594
21.5
RHH5251_R3623
30.7
RHH5280_R3652
22.0
Non-classical monocyte nTPM: 25.0
Samples: 4
Max nTPM: 29.9
Min nTPM: 15.7
RHH5315_R3682
24.6
RHH5223_R3595
29.9
RHH5252_R3624
29.9
RHH5281_R3653
15.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.7
Schmiedel sample id
TPM
Classical monocyte TPM: 136.6
Samples: 91
Max TPM: 267.0
Min TPM: 76.5
MONOCYTES_1
267.0
MONOCYTES_2
218.9
MONOCYTES_3
217.5
MONOCYTES_4
216.5
MONOCYTES_5
215.9
MONOCYTES_6
213.0
MONOCYTES_7
206.1
MONOCYTES_8
204.6
MONOCYTES_9
200.7
MONOCYTES_10
196.6
MONOCYTES_11
195.9
MONOCYTES_12
191.5
MONOCYTES_13
181.6
MONOCYTES_14
181.1
MONOCYTES_15
174.4
MONOCYTES_16
174.3
MONOCYTES_17
171.0
MONOCYTES_18
170.6
MONOCYTES_19
170.2
MONOCYTES_20
168.8
MONOCYTES_21
168.7
MONOCYTES_22
160.7
MONOCYTES_23
159.4
MONOCYTES_24
156.6
MONOCYTES_25
156.2
MONOCYTES_26
151.4
MONOCYTES_27
147.4
MONOCYTES_28
146.5
MONOCYTES_29
146.3
MONOCYTES_30
144.5
MONOCYTES_31
144.3
MONOCYTES_32
144.0
MONOCYTES_33
143.5
MONOCYTES_34
143.2
MONOCYTES_35
139.1
MONOCYTES_36
138.2
MONOCYTES_37
135.8
MONOCYTES_38
135.3
MONOCYTES_39
134.3
MONOCYTES_40
131.0
MONOCYTES_41
130.7
MONOCYTES_42
130.4
MONOCYTES_43
130.1
MONOCYTES_44
130.0
MONOCYTES_45
129.9
MONOCYTES_46
127.6
MONOCYTES_47
126.2
MONOCYTES_48
125.5
MONOCYTES_49
125.3
MONOCYTES_50
124.5
MONOCYTES_51
124.5
MONOCYTES_52
122.9
MONOCYTES_53
122.2
MONOCYTES_54
122.0
MONOCYTES_55
121.5
MONOCYTES_56
121.5
MONOCYTES_57
121.4
MONOCYTES_58
121.4
MONOCYTES_59
120.6
MONOCYTES_60
120.6
MONOCYTES_61
119.2
MONOCYTES_62
119.0
MONOCYTES_63
116.6
MONOCYTES_64
116.1
MONOCYTES_65
113.2
MONOCYTES_66
113.1
MONOCYTES_67
111.1
MONOCYTES_68
110.7
MONOCYTES_69
109.5
MONOCYTES_70
108.0
MONOCYTES_71
107.5
MONOCYTES_72
105.6
MONOCYTES_73
105.1
MONOCYTES_74
104.3
MONOCYTES_75
103.7
MONOCYTES_76
103.4
MONOCYTES_77
103.2
MONOCYTES_78
100.6
MONOCYTES_79
99.3
MONOCYTES_80
96.4
MONOCYTES_81
93.1
MONOCYTES_82
91.5
MONOCYTES_83
86.0
MONOCYTES_84
84.2
MONOCYTES_85
83.6
MONOCYTES_86
81.6
MONOCYTES_87
78.7
MONOCYTES_88
78.2
MONOCYTES_89
77.8
MONOCYTES_90
76.6
MONOCYTES_91
76.5
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Non-classical monocyte TPM: 148.7
Samples: 90
Max TPM: 238.3
Min TPM: 79.8
M2_1
238.3
M2_2
233.2
M2_3
229.9
M2_4
226.9
M2_5
223.6
M2_6
216.9
M2_7
210.6
M2_8
208.3
M2_9
206.7
M2_10
200.7
M2_11
200.6
M2_12
199.6
M2_13
197.2
M2_14
194.2
M2_15
189.9
M2_16
186.3
M2_17
186.3
M2_18
181.2
M2_19
179.2
M2_20
178.1
M2_21
174.4
M2_22
174.3
M2_23
174.3
M2_24
174.1
M2_25
172.3
M2_26
169.9
M2_27
168.4
M2_28
168.3
M2_29
165.6
M2_30
163.5
M2_31
162.7
M2_32
162.6
M2_33
158.4
M2_34
156.5
M2_35
155.6
M2_36
153.5
M2_37
153.4
M2_38
151.0
M2_39
149.6
M2_40
148.8
M2_41
148.8
M2_42
146.6
M2_43
146.2
M2_44
144.7
M2_45
144.2
M2_46
140.4
M2_47
139.5
M2_48
139.5
M2_49
137.0
M2_50
136.9
M2_51
135.6
M2_52
135.4
M2_53
134.1
M2_54
134.0
M2_55
133.7
M2_56
131.3
M2_57
130.8
M2_58
128.9
M2_59
128.5
M2_60
128.0
M2_61
125.7
M2_62
125.3
M2_63
123.6
M2_64
123.5
M2_65
123.3
M2_66
122.6
M2_67
122.5
M2_68
122.4
M2_69
120.3
M2_70
119.4
M2_71
116.3
M2_72
116.0
M2_73
115.6
M2_74
115.1
M2_75
111.9
M2_76
111.0
M2_77
110.9
M2_78
108.0
M2_79
104.9
M2_80
104.1
M2_81
103.6
M2_82
103.4
M2_83
103.0
M2_84
100.4
M2_85
98.4
M2_86
96.7
M2_87
92.6
M2_88
89.0
M2_89
85.6
M2_90
79.8
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