On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
52.1
nTPM
HPA Brain:
128.8
nTPM
GTEx:
52.1
nTPM
FANTOM5:
370.3
Scaled Tags Per Million
Macaque:
105.7
nTPM
Mouse:
147.3
nTPM
Rat:
95.6
nTPM
Pig:
109.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 124.0
2019
Male, age 18, unknown
134.6
2411
Female, age 72, unknown
132.7
1870
Female, age 42, unknown
130.8
2586
Male, age 75, left hemisphere
128.8
1827
Male, age 72, unknown
127.0
2828
Female, age 72, unknown
122.7
1830
Male, age 51, unknown
120.2
2666
Male, age 74, left hemisphere
118.5
1833
Male, age 53, unknown
117.0
2219
Male, age 76, both hemispheres
107.5
Dorsal raphe nucleus nTPM: 115.0
2750
Male, age 76, both hemispheres
124.9
2016
Female, age 72, unknown
118.1
1828
Male, age 53, unknown
116.5
2298
Female, age 72, unknown
109.3
2047
Male, age 72, unknown
106.0
Inferior colliculus nTPM: 112.6
1890
Male, age 53, unknown
117.6
2097
Female, age 72, unknown
115.4
1848
Female, age 42, unknown
111.6
2849
Male, age 72, unknown
106.0
Median raphe nucleus nTPM: 112.8
2220
Male, age 76, midline
112.8
Periaquaductal grey, anterior nTPM: 120.9
2502
Female, age 75, unknown
132.0
1947
Male, age 18, unknown
120.1
1795
Male, age 51, unknown
110.6
Periaquaductal grey, dorsal nTPM: 110.3
1831
Male, age 72, unknown
118.4
2464
Female, age 72, unknown
115.5
2850
Male, age 76, both hemispheres
108.3
1840
Male, age 53, unknown
99.2
Periaquaductal grey, lateral nTPM: 106.9
2053
Male, age 18, unknown
115.9
2140
Male, age 76, both hemispheres
103.4
2272
Male, age 74, both hemispheres
101.3
Pretectal area nTPM: 125.1
1816
Male, age 51, unknown
143.1
1815
Male, age 53, unknown
136.7
2007
Male, age 72, unknown
135.7
1944
Female, age 72, unknown
134.0
1817
Female, age 42, unknown
129.8
2273
Male, age 74, both hemispheres
129.4
2316
Male, age 76, right hemisphere
115.4
2407
Male, age 75, both hemispheres
115.4
2825
Male, age 18, unknown
113.5
2667
Female, age 75, unknown
112.3
2224
Female, age 72, unknown
110.7
Red nucleus nTPM: 128.8
1865
Male, age 51, unknown
148.8
1821
Female, age 72, unknown
145.6
1904
Male, age 53, unknown
140.1
2503
Female, age 72, unknown
137.3
2785
Male, age 18, unknown
136.8
1954
Female, age 42, unknown
126.9
2588
Male, age 74, left hemisphere
126.4
2769
Male, age 72, unknown
124.0
2227
Male, age 72, unknown
123.3
2823
Male, age 76, right hemisphere
117.8
2725
Female, age 75, unknown
112.4
2584
Male, age 75, left hemisphere
106.5
Substantia nigra nTPM: 115.3
1889
Female, age 72, unknown
130.2
2409
Female, age 72, unknown
126.9
2583
Male, age 75, right hemisphere
119.9
2590
Female, age 75, unknown
119.1
1941
Male, age 53, unknown
117.7
2241
Male, age 72, unknown
113.0
1851
Male, age 51, unknown
112.8
2665
Male, age 74, both hemispheres
108.5
1916
Female, age 42, unknown
104.0
2699
Male, age 18, unknown
101.1
Superior colliculus nTPM: 127.9
1913
Female, age 42, unknown
147.2
2668
Female, age 75, unknown
142.3
1995
Male, age 72, unknown
133.2
2587
Male, age 74, left hemisphere
130.5
2261
Male, age 18, unknown
126.7
2664
Male, age 75, both hemispheres
126.0
2087
Female, age 72, unknown
121.6
1895
Male, age 76, right hemisphere
120.6
1796
Male, age 53, unknown
119.6
1839
Male, age 51, unknown
111.3
Ventral tegmental area nTPM: 110.6
2410
Female, age 72, unknown
119.5
2223
Female, age 72, unknown
118.3
1942
Male, age 51, unknown
108.6
2218
Male, age 76, both hemispheres
107.1
2021
Male, age 53, unknown
106.2
1915
Female, age 42, unknown
103.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 52.1
Samples: 183
Max nTPM: 151.0
Min nTPM: 19.6
Std nTPM: 17.7
Median nTPM: 48.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
151.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
108.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
99.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
95.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
92.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
91.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
88.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
87.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
85.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
81.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
81.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
80.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
79.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
78.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
76.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
75.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
75.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
75.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
74.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
73.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
72.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
71.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
71.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
71.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
71.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
71.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
70.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
70.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
70.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
68.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
68.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
68.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
67.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
67.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
66.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
66.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
66.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
66.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
65.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
65.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
64.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
63.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
62.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
61.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
61.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
61.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
61.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
60.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
60.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
60.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
59.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
59.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
59.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
59.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
58.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
57.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
57.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
56.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
56.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
56.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
55.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
55.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
54.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
54.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
54.2
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
54.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
53.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
53.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
52.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
52.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
52.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
52.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
52.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
52.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
52.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
51.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
51.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
51.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
51.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
51.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
51.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
50.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
50.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
50.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
50.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
50.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
50.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
49.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
49.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
49.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
48.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
48.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
48.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
48.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
47.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
47.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
47.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
47.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
47.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
46.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
46.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
46.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
46.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
45.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
45.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
45.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
45.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
45.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
45.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
45.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
44.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
44.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
44.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
44.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
44.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
44.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
44.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
44.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
44.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
43.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
43.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
43.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
42.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
42.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
42.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
42.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
42.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
42.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
41.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
41.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
41.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
41.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
40.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
40.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
40.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
40.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
38.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
38.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
38.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
38.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
37.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
37.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
37.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
36.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
36.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
36.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
36.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
35.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
35.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
35.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
35.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
34.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
34.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
33.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
33.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
33.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
33.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
33.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
32.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
32.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
32.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
32.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
32.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
31.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
31.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
31.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
31.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
31.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
30.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
29.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
28.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
24.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
23.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
19.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 105.7
Samples: 1
Max nTPM: 105.7
Min nTPM: 105.7
Sample A
105.7
Midbrain nTPM: 79.1
Samples: 1
Max nTPM: 79.1
Min nTPM: 79.1
Sample A
79.1
Superior colliculi nTPM: 84.2
Samples: 1
Max nTPM: 84.2
Min nTPM: 84.2
Sample A
84.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 92.3
Samples: 3
Max nTPM: 96.6
Min nTPM: 86.8
Sample A
Female
96.6
Sample B
Female
86.8
Sample C
Male
93.5
Midbrain nTPM: 109.3
Samples: 3
Max nTPM: 112.8
Min nTPM: 105.9
Sample B
Female
109.3
Sample C
Male
112.8
Sample D
Male
105.9
Periaqueductal gray nTPM: 96.1
Samples: 3
Max nTPM: 104.0
Min nTPM: 91.3
Sample B
Female
104.0
Sample C
Male
93.0
Sample D
Male
91.3
Superior colliculi nTPM: 99.1
Samples: 4
Max nTPM: 109.0
Min nTPM: 74.6
Sample A
Female
106.0
Sample B
Female
74.6
Sample C
Male
109.0
Sample D
Male
106.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
147.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 147.3
Samples: 4
Max nTPM: 158.6
Min nTPM: 138.2
Sample A
138.2
Sample B
139.5
Sample C
152.7
Sample D
158.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 95.6
Samples: 4
Max nTPM: 98.3
Min nTPM: 93.3
Sample A
93.3
Sample A
94.9
Sample A
96.0
Sample A
98.3
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The Human Protein Atlas project is funded
