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  • MGST1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:182.4 nTPM
HPA Brain:85.1 nTPM
GTEx:182.4 nTPM
FANTOM5:298.4 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:18.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.1
Sample id Sample description nTPM
Amygdala
nTPM: 79.3
1987 Female, age 91, left hemisphere 103.3
2514 Male, age 75, right hemisphere 87.4
2517 Female, age 94, left hemisphere 74.3
2814 Male, age 76, right hemisphere 72.4
2695 Female, age 67, right hemisphere 59.2
Basal amygdala
nTPM: 67.8
2243 Female, age 91, right hemisphere 91.7
1955 Male, age 76, both hemispheres 89.5
2609 Male, age 75, right hemisphere 79.3
2110 Male, age 80, left hemisphere 67.6
2685 Female, age 94, left hemisphere 53.1
2827 Female, age 67, right hemisphere 25.5
Central amygdala
nTPM: 85.1
2239 Male, age 80, left hemisphere 103.7
2515 Male, age 75, right hemisphere 103.2
2701 Female, age 91, right hemisphere 99.6
1905 Male, age 76, both hemispheres 82.4
2826 Female, age 94, left hemisphere 36.6
Corticomedial amygdala
nTPM: 82.1
2242 Female, age 91, right hemisphere 110.9
2240 Male, age 76, both hemispheres 98.2
2428 Male, age 75, right hemisphere 89.1
2429 Female, age 94, left hemisphere 78.9
2829 Male, age 80, left hemisphere 78.2
2535 Female, age 67, right hemisphere 37.5
Lateral amygdala
nTPM: 59.4
2256 Male, age 80, left hemisphere 84.5
2255 Female, age 91, right hemisphere 76.1
2516 Male, age 75, right hemisphere 69.1
1883 Male, age 76, both hemispheres 62.4
2534 Female, age 94, left hemisphere 49.0
2830 Female, age 67, right hemisphere 15.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 182.4
Samples: 181

Max nTPM: 551.0
Min nTPM: 36.8
Std nTPM: 88.3
Median nTPM: 161.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 551.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 442.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 413.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 399.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 391.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 386.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 370.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 365.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 346.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 339.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 330.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 326.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 322.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 322.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 319.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 318.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 316.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 315.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 315.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 313.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 313.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 309.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 307.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 296.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 291.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 284.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 275.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 273.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 269.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 265.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 264.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 262.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 261.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 258.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 254.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 253.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 248.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 246.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 243.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 241.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 239.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 235.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 234.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 231.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 230.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 229.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 229.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 228.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 227.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 227.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 222.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 221.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 217.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 216.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 216.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 215.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 214.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 202.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 200.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 196.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 195.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 194.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 192.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 191.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 190.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 186.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 186.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 185.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 184.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 183.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 178.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 177.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 176.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 176.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 175.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 172.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 172.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 171.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 169.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 168.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 166.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 165.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 163.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 162.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 161.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 161.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 159.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 158.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 157.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 155.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 154.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 152.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 151.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 151.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 150.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 149.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 149.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 147.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 147.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 147.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 146.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 146.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 145.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 144.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 144.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 144.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 142.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 141.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 138.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 136.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 134.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 132.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 129.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 125.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 124.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 119.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 118.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 117.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 115.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 112.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 110.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 107.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 92.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 92.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 91.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 88.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 86.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 86.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 85.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 82.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 77.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 70.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 64.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 64.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 63.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 59.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 51.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 42.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 37.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 37.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 36.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

298.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 298.4
FF:10151-102I7 76 years, female 298.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.0
Pig sample Sample description nTPM
Amygdala
nTPM: 70.0
Samples: 4

Max nTPM: 88.8
Min nTPM: 48.4
Sample A Female 67.3
Sample B Female 88.8
Sample C Male 75.6
Sample D Male 48.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.3
Sample A Male 18.6
Sample B Male 17.8
Sample C Female 20.4
Sample D Female 17.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68269646 Antisense, RP_041129_02_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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