A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5496.1
nTPM
Monaco:
647.8
nTPM
Schmiedel:
545.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5496.1
HPA sample
nTPM
Memory B-cell nTPM: 5496.1
Samples: 6
Max nTPM: 7724.8
Min nTPM: 4113.5
P10809_1017
4113.5
P10809_1025
4962.8
P10809_1044
7724.8
P10809_1063
6037.3
P10809_1092
4610.5
P10809_1105
5527.7
Naive B-cell nTPM: 4645.4
Samples: 6
Max nTPM: 7084.9
Min nTPM: 3299.9
P10809_1011
3299.9
P10809_1029
4401.9
P10809_1048
7084.9
P10809_1067
4880.9
P10809_1091
3779.7
P10809_1104
4424.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
647.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 647.8
Samples: 4
Max nTPM: 1155.3
Min nTPM: 211.0
RHH5310_R3677
480.7
RHH5218_R3590
211.0
RHH5247_R3619
1155.3
RHH5276_R3648
744.0
Naive B-cell nTPM: 543.1
Samples: 4
Max nTPM: 938.8
Min nTPM: 230.0
RHH5308_R3675
555.1
RHH5216_R3588
230.0
RHH5245_R3617
938.8
RHH5274_R3646
448.3
Non-switched memory B-cell nTPM: 486.3
Samples: 4
Max nTPM: 813.8
Min nTPM: 272.8
RHH5309_R3676
582.0
RHH5217_R3589
272.8
RHH5246_R3618
276.5
RHH5275_R3647
813.8
Plasmablast nTPM: 394.7
Samples: 4
Max nTPM: 505.4
Min nTPM: 215.2
RHH5312_R3679
505.4
RHH5220_R3592
215.2
RHH5249_R3621
417.9
RHH5278_R3650
440.3
Switched memory B-cell nTPM: 452.7
Samples: 4
Max nTPM: 618.7
Min nTPM: 297.3
RHH5311_R3678
507.6
RHH5219_R3591
387.3
RHH5248_R3620
297.3
RHH5277_R3649
618.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
545.7
Schmiedel sample id
TPM
Naive B-cell TPM: 545.7
Samples: 91
Max TPM: 795.1
Min TPM: 398.6
B_CELL_NAIVE_1
795.1
B_CELL_NAIVE_2
687.4
B_CELL_NAIVE_3
682.9
B_CELL_NAIVE_4
675.0
B_CELL_NAIVE_5
650.4
B_CELL_NAIVE_6
639.2
B_CELL_NAIVE_7
638.2
B_CELL_NAIVE_8
634.8
B_CELL_NAIVE_9
631.9
B_CELL_NAIVE_10
629.7
B_CELL_NAIVE_11
627.1
B_CELL_NAIVE_12
626.4
B_CELL_NAIVE_13
619.5
B_CELL_NAIVE_14
618.5
B_CELL_NAIVE_15
618.4
B_CELL_NAIVE_16
618.3
B_CELL_NAIVE_17
616.4
B_CELL_NAIVE_18
615.6
B_CELL_NAIVE_19
612.8
B_CELL_NAIVE_20
607.9
B_CELL_NAIVE_21
605.8
B_CELL_NAIVE_22
605.4
B_CELL_NAIVE_23
597.7
B_CELL_NAIVE_24
597.6
B_CELL_NAIVE_25
591.9
B_CELL_NAIVE_26
583.8
B_CELL_NAIVE_27
580.5
B_CELL_NAIVE_28
577.0
B_CELL_NAIVE_29
577.0
B_CELL_NAIVE_30
574.5
B_CELL_NAIVE_31
573.9
B_CELL_NAIVE_32
571.8
B_CELL_NAIVE_33
571.6
B_CELL_NAIVE_34
570.8
B_CELL_NAIVE_35
570.3
B_CELL_NAIVE_36
570.0
B_CELL_NAIVE_37
566.7
B_CELL_NAIVE_38
562.9
B_CELL_NAIVE_39
560.8
B_CELL_NAIVE_40
559.1
B_CELL_NAIVE_41
557.2
B_CELL_NAIVE_42
555.3
B_CELL_NAIVE_43
551.6
B_CELL_NAIVE_44
549.2
B_CELL_NAIVE_45
548.7
B_CELL_NAIVE_46
548.6
B_CELL_NAIVE_47
547.6
B_CELL_NAIVE_48
542.2
B_CELL_NAIVE_49
541.2
B_CELL_NAIVE_50
540.1
B_CELL_NAIVE_51
540.1
B_CELL_NAIVE_52
537.9
B_CELL_NAIVE_53
536.4
B_CELL_NAIVE_54
525.1
B_CELL_NAIVE_55
525.1
B_CELL_NAIVE_56
519.2
B_CELL_NAIVE_57
514.2
B_CELL_NAIVE_58
512.8
B_CELL_NAIVE_59
510.8
B_CELL_NAIVE_60
508.1
B_CELL_NAIVE_61
507.0
B_CELL_NAIVE_62
505.8
B_CELL_NAIVE_63
505.3
B_CELL_NAIVE_64
505.0
B_CELL_NAIVE_65
504.4
B_CELL_NAIVE_66
497.6
B_CELL_NAIVE_67
496.1
B_CELL_NAIVE_68
495.8
B_CELL_NAIVE_69
495.1
B_CELL_NAIVE_70
492.5
B_CELL_NAIVE_71
490.7
B_CELL_NAIVE_72
488.3
B_CELL_NAIVE_73
488.2
B_CELL_NAIVE_74
486.9
B_CELL_NAIVE_75
471.4
B_CELL_NAIVE_76
469.4
B_CELL_NAIVE_77
468.9
B_CELL_NAIVE_78
465.8
B_CELL_NAIVE_79
464.5
B_CELL_NAIVE_80
461.8
B_CELL_NAIVE_81
459.7
B_CELL_NAIVE_82
454.2
B_CELL_NAIVE_83
451.4
B_CELL_NAIVE_84
447.3
B_CELL_NAIVE_85
447.1
B_CELL_NAIVE_86
446.4
B_CELL_NAIVE_87
439.7
B_CELL_NAIVE_88
422.5
B_CELL_NAIVE_89
403.2
B_CELL_NAIVE_90
399.6
B_CELL_NAIVE_91
398.6
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